Pairwise Alignments

Query, 434 a.a., Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) from Pseudomonas fluorescens FW300-N2E2

Subject, 384 a.a., flagellar protein FlgJ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  201 bits (512), Expect = 2e-56
 Identities = 131/409 (32%), Positives = 208/409 (50%), Gaps = 45/409 (11%)

Query: 14  SASYSDLNRLNQLKV-GDKNSDGNLRKVAQEFESLFIGEMLKSMRSATEVLGKDNPMNTP 72
           S+ + DL  L+ L+    K+  G L+KVAQ+FE +F+  ++KSMR A  V   D+P+N+ 
Sbjct: 7   SSHFLDLGGLDNLRAQAQKDEKGALKKVAQQFEGVFVQMLMKSMRDANAVFESDSPLNSQ 66

Query: 73  EAKQYQEMYDQQLAVSMSREGGGIGLADVLLRQMS-KNKPTAPGEAATLSAAKQQDALDK 131
             K Y++M DQQL+V +S + G +GLAD++++Q+S ++ P  P          + +  D 
Sbjct: 67  YTKFYEQMRDQQLSVDLS-DKGVLGLADMMVQQLSPESSPFTPASVLRNDGGMKLEH-DA 124

Query: 132 VAKRVPTPVAAGTLPTDGPLSRSNGQRPLWASRAVSTPQGAEGIHRNDMELLNQRRLALP 191
            A  +PT        T       +   P+  +  V        +   D    N    +L 
Sbjct: 125 KALNIPTQ-------TPSTAEAESANTPVVVAHGVPASIARPSVEFEDN---NGVTSSLD 174

Query: 192 PKLADRLLAGLVPSAAVNADVPAQNVLTDRAIAAVKPATGELANGDWLAALKAAEPKGDM 251
                RLLA          D P +   +++ ++A++P    + +G  L  +   E +  +
Sbjct: 175 IDRPQRLLA---------IDTP-KPTWSEQPLSAIEP----VISGQILPTVAFRETQKTL 220

Query: 252 QVYGRAVAQPPLAPARKAFRDADEFVNAMLPMAKEAADRIGVDPRYLVAQAALETGWGKS 311
           +                 F   +EF+  + P A++AA  +G  P  L+AQ+ALETGWG+ 
Sbjct: 221 K-----------------FGSREEFLATLYPHAEKAAKALGTKPEVLLAQSALETGWGQK 263

Query: 312 VMRQPDGSSSHNLFGIKASANWKGDSARAITSEFRNGAMVKETAEFRSYASYRDSFHDLV 371
           ++R  +G+ SHNLF IKA   W+GD A   T EF  G  V++ A+FR Y  +  SF+D V
Sbjct: 264 IVRGHNGAPSHNLFNIKADRRWQGDKANVSTLEFEQGIAVRQKADFRVYNDFDHSFNDFV 323

Query: 372 NLLQSNSRYQDVLKSADKPEQFVRELQKAGYATDPNYANKISNIARQMT 420
           + +    RYQD  K A  P QF+R LQ+AGYATDP YA K+  + + ++
Sbjct: 324 SFIADGERYQDAKKVAASPTQFIRALQEAGYATDPKYAEKVIKVMQSIS 372