Pairwise Alignments

Query, 491 a.a., Flagellar regulatory protein FleQ from Pseudomonas fluorescens FW300-N2E2

Subject, 455 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  262 bits (670), Expect = 2e-74
 Identities = 168/440 (38%), Positives = 240/440 (54%), Gaps = 54/440 (12%)

Query: 55  VLIGTVNAP-ATLLGLLKTLSTWDEFLPVLLMGENSSLDLP-EDQRRRVLSTLEMPPSYS 112
           ++I  VN P    L L++TL   D+ +P++L+  +  + +  +  ++     +E P +  
Sbjct: 55  IVISDVNMPDIDGLSLMRTLLAQDKDIPIILLTGHGDIAMAVQALKQGAYDFIEKPFNNE 114

Query: 113 KLLDSLHRAQVYREMYDQARERGRHREPNLFRS--LVGTSRAIQHVRQMMQQVADTDASV 170
            +LD   RA   R +  + R   R  E        ++G S  I+ +R ++ QV D  A V
Sbjct: 115 HMLDIAKRALEKRALTLENRSLKRELESQSTPGPRILGHSPGIKQMRHIIHQVIDMPADV 174

Query: 171 LILGESGTGKEVVARNLHYHSKRREAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSR 230
           LI GE+GTGKE+VAR LH HS R EA FV +NCGAIP  ++ESELFG E GAFTGA  +R
Sbjct: 175 LIEGETGTGKELVARYLHDHSPRAEANFVAINCGAIPETIIESELFGAESGAFTGADKTR 234

Query: 231 AGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSVDVRIIAATHKNL 290
            G+FE ANGGTLFLDEI   PL +QVKLLRVL++R  ER+GSNK+  +D+RIIAAT  +L
Sbjct: 235 IGKFEYANGGTLFLDEIESTPLSLQVKLLRVLEDRKVERLGSNKSIDLDIRIIAATKVDL 294

Query: 291 ESMIEVGSFREDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSAAI 350
           +S+ + G FR+DL YRLN+  + +  LRER EDI LL       +   +  S R++ A I
Sbjct: 295 KSLCDTGEFRQDLLYRLNLVTVPIPALRERREDIGLLF------LHFARVASARYHKALI 348

Query: 351 -------MSLCRHGWPGNVRELANLVERMAIMHPYGVIGVNELPKKFRYVDDEDEQMVDS 403
                    L  H WPGNVREL NL ER  ++ P      +                   
Sbjct: 349 PLTAEYTAQLVSHDWPGNVRELRNLAERYVLLGPEAAFATS------------------- 389

Query: 404 LRSDLEERVAINGHTPDFTANALLPPEGLDLKDYLGGLEQGLIQQALDDANGIVARAAER 463
                       G +    AN       + L+  +   E+ LI++AL +  G +    E+
Sbjct: 390 -----------LGQSSQLNAN-------MSLQQRVEFFERLLIEEALSNNKGSIKLTMEQ 431

Query: 464 LRIRRTTLVEKMRKYGMSRR 483
           L + R TL +KM+K+G++R+
Sbjct: 432 LELPRKTLYDKMQKFGLNRK 451