Pairwise Alignments

Query, 491 a.a., Flagellar regulatory protein FleQ from Pseudomonas fluorescens FW300-N2E2

Subject, 477 a.a., sigma-54 dependent trancsriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  449 bits (1156), Expect = e-131
 Identities = 254/490 (51%), Positives = 326/490 (66%), Gaps = 23/490 (4%)

Query: 1   MWRETKILLIDDDSVRRRDLAVILNFLGEENLPCGSHDWQQAVGSLSSSREVICVLIGTV 60
           M  + +ILL+ + S R   L+ +  FLGE+            + S  S+     ++I   
Sbjct: 2   MQTDQRILLVGNQSERINRLSCVFEFLGEQVELLAV----DRLESRMSNTRYRALVIAQE 57

Query: 61  NAPATLLGLLKTLSTWDEFLPVLLMGENSSLDLPEDQRRRVLSTLEMPPSYSKLLDSLHR 120
               TLL  + T   W    P+LL+G N  +         VL  +E P +Y +L + LH 
Sbjct: 58  AQSKTLLQSIATSMPWQ---PILLLGSNGDVTAGN-----VLGCIEEPLNYPQLTELLHF 109

Query: 121 AQVYREMYDQARERGRHREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGK 180
            QV+ +          + +  LFRSLVG S  I  VR ++ QVA +DA+VL+LG+SGTGK
Sbjct: 110 CQVFVQAKRPDIPTSGN-QTKLFRSLVGRSEGIAQVRHLINQVAGSDATVLVLGQSGTGK 168

Query: 181 EVVARNLHYHSKRREAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGG 240
           EVVARN+HY S RR+ PF+PVNCGAIP ELLESELFGHEKG+FTGAI++R GRFELA GG
Sbjct: 169 EVVARNIHYISDRRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISARKGRFELAEGG 228

Query: 241 TLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSVDVRIIAATHKNLESMIEVGSFR 300
           TLFLDEIGDMPL MQVKLLRVLQER FERVG +K    +VR+IAATH+ LE+MI  G FR
Sbjct: 229 TLFLDEIGDMPLQMQVKLLRVLQERVFERVGGSKPIHTNVRVIAATHRELETMIANGEFR 288

Query: 301 EDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHGWPG 360
           EDL+YRLNVFP+EM  L ER +DIPLL+ EL+SR+ +E RG +RF   AI SL  H W G
Sbjct: 289 EDLFYRLNVFPVEMPALCERKDDIPLLLQELVSRVYNEGRGKVRFTQRAIESLKEHSWSG 348

Query: 361 NVRELANLVERMAIMHPYGVIGVNELPKKFRYVD--------DEDEQMVDSLRSDLEERV 412
           NVREL+NLVER+ I++P G++ VN+LP K+R++D         E+E   D+L S   + V
Sbjct: 349 NVRELSNLVERLTILYPGGLVDVNDLPLKYRHIDVPEYQVQVSEEELERDALASIFSDEV 408

Query: 413 AINGHTPDFTANALLPPEGLDLKDYLGGLEQGLIQQALDDANGIVARAAERLRIRRTTLV 472
           A++   P+    + LPPEG++LKD L  LE  +I+QALD  + +VARAAE L IRRTTLV
Sbjct: 409 AVD--IPESRFPSELPPEGVNLKDLLAELEIDMIRQALDQQDNVVARAAEMLGIRRTTLV 466

Query: 473 EKMRKYGMSR 482
           EKMRKYGMS+
Sbjct: 467 EKMRKYGMSK 476