Pairwise Alignments

Query, 491 a.a., Flagellar regulatory protein FleQ from Pseudomonas fluorescens FW300-N2E2

Subject, 477 a.a., flagellar regulatory protein A (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  449 bits (1156), Expect = e-131
 Identities = 257/492 (52%), Positives = 328/492 (66%), Gaps = 27/492 (5%)

Query: 1   MWRETKILLIDDDSVRRRDLAVILNFLGEENLPCGSHDWQQAVGSLSSSREVICVLIGTV 60
           M  + +ILL+   S R   L  I  FLGE+          + + +         ++I   
Sbjct: 2   MQTDQRILLVGTPSERLSRLCCIFEFLGEQI----DIITIEKLSTCLQETRFRALVISID 57

Query: 61  NAPATLLGLLKTLSTWDEFLPVLLMGENSSLDLPEDQRRRVLSTLEMPPSYSKLLDSLHR 120
           N  A  L L+ +   W    P+LL G    L     Q   VL  +E P +Y +L + LH 
Sbjct: 58  NMSADALKLVASQYPWQ---PILLFGHVGEL-----QVSNVLGHIEEPLNYPQLTELLHF 109

Query: 121 AQVYREMYDQARERGRHREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGK 180
            QVY ++  + +      +  LFRSLVG S  I +VR ++ QVA +DA+VL+LG+SGTGK
Sbjct: 110 CQVYGQV-KRPQVPTSANQTKLFRSLVGRSDGIANVRHLISQVATSDATVLVLGQSGTGK 168

Query: 181 EVVARNLHYHSKRREAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGG 240
           EVVARN+HY S+RR+ PF+PVNCGAIP ELLESELFGHEKG+FTGAI+SR GRFELA GG
Sbjct: 169 EVVARNIHYLSERRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGG 228

Query: 241 TLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSVDVRIIAATHKNLESMIEVGSFR 300
           TLFLDEIGDMPL MQVKLLRVLQER FERVG  KT + DVR++AATH++LE+MI    FR
Sbjct: 229 TLFLDEIGDMPLQMQVKLLRVLQERVFERVGGTKTINADVRVVAATHRDLETMISSNEFR 288

Query: 301 EDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHGWPG 360
           EDLYYRLNVFPIEM  L ER +D+PLL+ EL+SR+ +E RG +RF   AI SL  H W G
Sbjct: 289 EDLYYRLNVFPIEMPALSERKDDVPLLLQELVSRVYNEGRGKVRFTQRAIESLKEHAWSG 348

Query: 361 NVRELANLVERMAIMHPYGVIGVNELPKKFRYVD--------DEDEQMVDSLRS--DLEE 410
           NVREL+NLVER+ I++P G++ VN+LP K+R++D         E++Q  D+L S    EE
Sbjct: 349 NVRELSNLVERLTILYPGGLVDVNDLPIKYRHIDVPEYSVELSEEQQERDALASIFTSEE 408

Query: 411 RVAINGHTPDFTANALLPPEGLDLKDYLGGLEQGLIQQALDDANGIVARAAERLRIRRTT 470
            V I    P+    + LPPEG++LKD L  LE  +I+QAL+  + +VARAAE L IRRTT
Sbjct: 409 PVEI----PETRFPSELPPEGVNLKDLLAELEIDMIRQALEQQDNVVARAAEMLGIRRTT 464

Query: 471 LVEKMRKYGMSR 482
           LVEKMRKYGM++
Sbjct: 465 LVEKMRKYGMTK 476