Pairwise Alignments

Query, 491 a.a., Flagellar regulatory protein FleQ from Pseudomonas fluorescens FW300-N2E2

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  284 bits (727), Expect = 4e-81
 Identities = 189/486 (38%), Positives = 270/486 (55%), Gaps = 34/486 (6%)

Query: 1   MWRETKILLIDDDSVRRRDLAVILNFLGEENLPCGSHDWQQAVGSLSSSREVICVLIGTV 60
           M   T IL+IDD+      L  +L   G        +D + A+  L  S   + V+I  +
Sbjct: 1   MSETTHILVIDDEKNYLLVLEALLTDAGYA--VTALNDPETALAFLEESE--VDVVITDM 56

Query: 61  NAPATLLG--LLKTLSTWDEFLPVLLMGENSSLDLPED-QRRRVLSTLEMPPSYSKLLDS 117
             P       L +   TW   +PV +M    S++   D  +      +  P S  +LL S
Sbjct: 57  KMPRVTGREVLERVKKTWPH-IPVCIMTAFGSIEGAVDVMKYGAFDYITKPFSNDELLLS 115

Query: 118 LHRAQVYREMYDQARE-RGRHREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGES 176
           +  A     ++ Q R  R    E      ++G S+AI+ V  M+ + A + ++VLI GES
Sbjct: 116 VQNAAELSRVHRQYRALRANLEERYGTHQIIGRSKAIREVLDMVDRAAPSRSTVLITGES 175

Query: 177 GTGKEVVARNLHYHSKRREAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFEL 236
           GTGKE+VAR +H+ S R   PFV VNC A+   +LESELFGHEKG+FTGA+  R GRFE 
Sbjct: 176 GTGKELVARAIHFSSPRNSGPFVSVNCMALNPGVLESELFGHEKGSFTGAMAMRRGRFEQ 235

Query: 237 ANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSVDVRIIAATHKNLESMIEV 296
           A+GGTLFLDEIG++   +QVKLLRVLQER FERVG      VD+R++AAT+K+L+  +E 
Sbjct: 236 ADGGTLFLDEIGELTPELQVKLLRVLQERRFERVGGGDEIEVDIRVVAATNKDLQKEVEN 295

Query: 297 GSFREDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIR-FNSAAIMSLCR 355
           G+FREDLYYRLNV  + + PLRER EDIPLL+   + ++  +     + F   A   L  
Sbjct: 296 GTFREDLYYRLNVVHVALPPLRERREDIPLLVGHFVEKLARDNGMKPKTFTPEAHDYLTG 355

Query: 356 HGWPGNVRELANLVERMAIMHPYGVIGVNELPKKFRYVDDEDEQMVDSLRSDLEERVAIN 415
           + WPGN+R+L N+VER  ++     +GV++LP + R   DE+ Q+  ++           
Sbjct: 356 YEWPGNIRQLQNVVERCLVLVASDTVGVDDLPPEIR---DEESQLKSAVD---------- 402

Query: 416 GHTPDFTANALLPPEGLDLKDYLGGLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKM 475
                      L P  LDL D L  +E  LI++AL  A  +  +AAE L I ++ L  K+
Sbjct: 403 -----------LLPVRLDLADTLEKIEAALIRRALVRAEFVQVKAAELLGISKSLLQYKL 451

Query: 476 RKYGMS 481
           +KYG++
Sbjct: 452 KKYGIT 457