Pairwise Alignments

Query, 491 a.a., Flagellar regulatory protein FleQ from Pseudomonas fluorescens FW300-N2E2

Subject, 472 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  278 bits (712), Expect = 2e-79
 Identities = 182/478 (38%), Positives = 267/478 (55%), Gaps = 17/478 (3%)

Query: 6   KILLIDDDSVRRRDLAVILNFLGEENLPCGSHDWQQAVGSLSSSREVICVLIGTVNAPAT 65
           +IL+IDD+   R  L  IL   G E     + D +  + +L+S    + V +        
Sbjct: 4   RILIIDDEDDIRFSLRGILEDEGHEVTE--APDGEAGLRTLASDTPDV-VFLDIWMPGMD 60

Query: 66  LLGLLKTLSTWDEFLPVLLMGENSSLDLPEDQ-RRRVLSTLEMPPSYSKLLDSLHRAQVY 124
            L +L+ +      LPV+++  + +++      ++     +E P S  K++ +  RA   
Sbjct: 61  GLTVLEHIHAAAPSLPVIMISGHGTIETAVAAIKKGAHDFIEKPLSLEKVVIAAERALEM 120

Query: 125 REMYDQARE-RGRHREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGKEVV 183
           RE+  + +  R      +    L+G S  ++ +R+ + +VA TDA VLI GE+GTGKE+ 
Sbjct: 121 RELRRENQALRSSLGAGSKADELIGESAPMRRIREQIARVAPTDAWVLITGENGTGKELA 180

Query: 184 ARNLHYHSKRREAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLF 243
           AR +H  S+R   P V VNC AIP EL+ESELFGHEKGAFTGA ++R G+FE+A+ GTLF
Sbjct: 181 ARAVHAGSQRATRPLVAVNCAAIPEELIESELFGHEKGAFTGAESARTGKFEMAHRGTLF 240

Query: 244 LDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSVDVRIIAATHKNLESMIEVGSFREDL 303
           LDEIGDM L  Q K+LR+LQE++FE+VG  +T  VDVR++AAT+KNLE  I  G+FREDL
Sbjct: 241 LDEIGDMSLKTQAKILRILQEQSFEKVGGTRTIRVDVRVVAATNKNLEEQIAQGTFREDL 300

Query: 304 YYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKR-GSIRFNSAAIMSLCRHGWPGNV 362
           YYRL VFP+ +  LRER +DI  L++  + R+  +     + F   A   L R+ WPGNV
Sbjct: 301 YYRLRVFPLSLPALRERGDDILRLLDAFMLRLCRDHAFAPLTFTDDAQDVLLRYRWPGNV 360

Query: 363 RELANLVERMAIMHPYGVIGVNELPKKFRYVDDEDEQMVDSLRSDLEERVAINGHTPDFT 422
           REL N VERM I+H    + V +LP +   + D       +  +  +   A  G   D  
Sbjct: 361 RELRNFVERMLILHAGESVDVEDLPPE--CLRDLSPSSDSATGTAAQSATATCGTGVDGI 418

Query: 423 ANALLPPEGLDLKDYLGGLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRKYGM 480
                    LD K      E   + + L +  G V+R AER+ + R+ L  K++ YG+
Sbjct: 419 ---------LDFKAARNAFETRFLAEQLQECGGNVSRLAERIGLERSHLHRKLKGYGI 467