Pairwise Alignments

Query, 491 a.a., Flagellar regulatory protein FleQ from Pseudomonas fluorescens FW300-N2E2

Subject, 349 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  296 bits (758), Expect = 8e-85
 Identities = 162/343 (47%), Positives = 224/343 (65%), Gaps = 17/343 (4%)

Query: 146 LVGTSRAIQHVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREAPFVPVNCGA 205
           ++G S  +  V +M+ +VA TD++VL+ GESGTGKE++ R LH +S+R + PFVP+NCGA
Sbjct: 8   IIGQSTTLCQVFRMLGKVAPTDSTVLVTGESGTGKELLVRALHANSQRAQQPFVPINCGA 67

Query: 206 IPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQER 265
           IP +LLESELFGHEKGAFT AI SR GRFELA+GGT+FLDEIG+M L +QVK+LRVLQE+
Sbjct: 68  IPKDLLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLMLQVKILRVLQEK 127

Query: 266 TFERVGSNKTQSVDVRIIAATHKNLESMIEVGSFREDLYYRLNVFPIEMAPLRERVEDIP 325
             ERVG   T+ VDVRI+AAT+++LE  +  G FREDLYYRLNV P+ + PLRER  DI 
Sbjct: 128 EIERVGGTGTKKVDVRIVAATNRDLEREVAAGRFREDLYYRLNVIPLHLPPLRERGGDIL 187

Query: 326 LLMNELISRM-EHEKRGSIRFNSAAIMSLCRHGWPGNVRELANLVERMAIMHPYGVIGVN 384
           +L    + R  E ++R  +         L  + WPGN+REL N +ER++I+    ++   
Sbjct: 188 VLAEHFLERFCERKQRARLALAPDTRKVLAAYSWPGNIRELENFMERVSILAEGDIVDPA 247

Query: 385 ELPKKFRYVDDEDEQMVDSLRSDLEERVAINGHTP----------DFTANALLPPEGLDL 434
           +LP+K        +++ D +       VA   H            D+   A +   G+ L
Sbjct: 248 DLPRKLL------DEVGDIVTLPEPAPVAPAAHAADVCRPAGGGFDWPTIADMRQRGMGL 301

Query: 435 KDYLGGLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRK 477
           KD+L  +E  L+Q+AL  A G+  +AAE L I+RTTL+EK++K
Sbjct: 302 KDFLDTMEDRLLQEALAMAEGVKNQAAEILGIKRTTLIEKLKK 344