Pairwise Alignments

Query, 594 a.a., Flagellar M-ring protein FliF from Pseudomonas fluorescens FW300-N2E2

Subject, 565 a.a., flagellar MS-ring protein (RefSeq) from Shewanella loihica PV-4

 Score =  315 bits (807), Expect = 3e-90
 Identities = 197/572 (34%), Positives = 310/572 (54%), Gaps = 53/572 (9%)

Query: 36  MLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMETLASADIPYTVEP 95
           MLRQ+ +++ LA  +A+   V+LW+Q+P+YRPL G +   +  QV++ L    + Y ++ 
Sbjct: 34  MLRQITMILALAICLALAVFVMLWAQEPEYRPL-GKMDTQEMVQVLDVLDKNKVNYQIDV 92

Query: 96  NSGALLVKADDVARARLKLAAAGVTPTDGNIGFEILDKDQGLGTSQFMEATRYRRGLEGE 155
           +   L V  D     ++ L+ AG+  +     +  L KD G G SQ MEA R +   E  
Sbjct: 93  D--VLKVPEDQYQDVKMMLSRAGIDNSPSRDDY--LSKDSGFGVSQRMEAARLKNSQEQN 148

Query: 156 LARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEPGQVVAIVNLVA 215
           LARTI  L +V  A+V LAIPK +VF R+  KPSA+V+V    G  L   +V +IV++VA
Sbjct: 149 LARTIEELKSVSRAKVILAIPKENVFARNRSKPSATVVVNTRRG-GLGQEEVDSIVDIVA 207

Query: 216 TSVPELSKSQITVVDQKGNLLSDQAENSELTMAGKQFDYSRRMEGMLTQRVHNILQPILG 275
           ++V  L  +++TV D  G LL+  ++ +    A ++ +  ++ E     ++ +IL PILG
Sbjct: 208 SAVHGLEPTRVTVTDANGRLLNSGSQTAGSARARRELELVQQKEAEYRSKIESILMPILG 267

Query: 276 NDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSVNEQRT-ASNGPQGVPGALSNQPP 334
            + + A+V  ++DF++VE T++++NPD PA+RSE +V    T AS G  G+ GALSNQPP
Sbjct: 268 PENFTAQVDVNMDFTSVEQTAKRYNPDLPAVRSEMTVENNSTGASTG--GIAGALSNQPP 325

Query: 335 SPASAPQTTGGATAAAGMVQPGQPLIDANGQQIMDPATGQPMLAPYPADKRQQSTKNFEL 394
             A+ PQ   G +A    +                           P    +++T+N+EL
Sbjct: 326 MEANIPQQATGTSAQEQTL---------------------------PGSSHKEATRNYEL 358

Query: 395 DRSISHTKQQQGRLNRLSVAVVVDDQVKVNAANGETSRAPWSADELARFTRLVQDAVGFD 454
           D +ISHT+QQ G + R+SV+V VD +      +G+ +R   +  EL+   RL++ AVGF+
Sbjct: 359 DTTISHTRQQVGVVRRVSVSVAVDFKTGPAGEDGQVTRVARTEQELSNIRRLLEGAVGFN 418

Query: 455 ASRGDSVSVINVPFSLERGEVVADIPFYSQPWFWDVVKQVLGVLFILVLVFGVLRPVLNN 514
             RGD + V+ VPF  +  E    +  Y +PWFW  +K V+G L ILVL+  V+RP+L  
Sbjct: 419 TQRGDMIEVVTVPFMDQLVEEAPALAIYEEPWFWRAIKLVMGGLIILVLILFVVRPMLKR 478

Query: 515 I--TGGGKNKQLAAFGDVELGGMGGLDGELANDRV----------SLGGPQSILLPSPSE 562
           +    G K     + GD     +  ++ + A D +          S     SIL+P   +
Sbjct: 479 LIYPDGQKMPDAPSLGD----ELAEIEDQYAADTLGMLNRPDAEYSYADDGSILIPDLHK 534

Query: 563 GYDAQLNAIKSLVAEDPGRVAQVVKEWINADE 594
             D  + AI++LVA +P    QVVK W+  +E
Sbjct: 535 D-DDMIKAIRALVANEPELSTQVVKGWLQENE 565