Pairwise Alignments

Query, 594 a.a., Flagellar M-ring protein FliF from Pseudomonas fluorescens FW300-N2E2

Subject, 553 a.a., flagellar M-ring protein FliF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  315 bits (806), Expect = 4e-90
 Identities = 202/576 (35%), Positives = 312/576 (54%), Gaps = 53/576 (9%)

Query: 28  LENLSEMTMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMETLASA 87
           L NL  + M+RQ+ +++ LA  +A+   V++W+Q+P+YRPL G +   +  QV++ L   
Sbjct: 14  LGNLGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPL-GKMETQEMVQVLDVLDKN 72

Query: 88  DIPYTVEPNSGALLVKADDVARARLKLAAAGVTPTDGNIGFEILDKDQGLGTSQFMEATR 147
            I Y ++ +   + V  D     ++ L+ AG+         + L +D G G SQ ME  R
Sbjct: 73  KIKYQIDVD--VVKVPEDKYQEVKMMLSRAGIDSA-ATSKQDFLTQDSGFGVSQRMEQAR 129

Query: 148 YRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEPGQV 207
            +   E  LAR I  L +V  A+V LA+PK +VF R+  +PSA+V++    G  L  G+V
Sbjct: 130 LKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTAQPSATVVINTRRG-GLGQGEV 188

Query: 208 VAIVNLVATSVPELSKSQITVVDQKGNLLSDQAENSELTMAGKQFDYSRRMEGMLTQRVH 267
            AIV++VA++V  L  S++TV D  G LL+  +++     A ++ +  ++ E     ++ 
Sbjct: 189 DAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKETEYRTKID 248

Query: 268 NILQPILGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSVNEQRTASNGPQGVPG 327
           +IL PILG+D + ++V   +DF+AVE T+++FNPD P+LRSE +V E  +      G+PG
Sbjct: 249 SILSPILGHDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTV-ENNSTGGSTGGIPG 307

Query: 328 ALSNQPPSPASAPQTTGGATAAAGMVQPGQPLIDANGQQIMDPATGQPMLAPYPADKRQQ 387
           ALSNQPP  ++ PQ    ATAA   V  G                          +  ++
Sbjct: 308 ALSNQPPMESNIPQEA--ATAATESVAAG--------------------------NSHRE 339

Query: 388 STKNFELDRSISHTKQQQGRLNRLSVAVVVDDQVKVNAANGETSRAPWSADELARFTRLV 447
           +T+NFELD +ISHT+QQ G + R+SV+V VD +      NG+ +R   +  EL    RL+
Sbjct: 340 ATRNFELDTTISHTRQQIGVVRRVSVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLL 399

Query: 448 QDAVGFDASRGDSVSVINVPFSLERGEVVADIP---FYSQPWFWDVVKQVLGVLFILVLV 504
           + AVGF A RGD + V+ VPF     ++V D+P    + QPWFW  VK  +G L ILVL+
Sbjct: 400 EGAVGFSAQRGDVLEVVTVPFM---DQLVEDVPAPELWEQPWFWRAVKLGVGALVILVLI 456

Query: 505 FGVLRPVLNNI---------TGGGKNKQLAAFGD-VELGGMGGLDGELANDRVSLGGPQS 554
             V+RP+L  +           G    +LA   D      +G L+ + A    S     S
Sbjct: 457 LAVVRPMLKRLIYPDRVNMPEDGRLGNELAEIEDQYAADTLGMLNTKEA--EYSYADDGS 514

Query: 555 ILLPSPSEGYDAQLNAIKSLVAEDPGRVAQVVKEWI 590
           IL+P+  +  D  + AI++LVA +P    QVVK W+
Sbjct: 515 ILIPNLHKD-DDMIKAIRALVANEPELSTQVVKNWL 549