Pairwise Alignments

Query, 339 a.a., Flagellar motor switch protein FliG from Pseudomonas fluorescens FW300-N2E2

Subject, 348 a.a., flagellar motor switch protein FliG (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  392 bits (1007), Expect = e-114
 Identities = 193/332 (58%), Positives = 260/332 (78%)

Query: 8   VAKLSRVDKAAILLLSLGSTDAAQVLRHMGPKEVQRVGVAMAQMGNVHREQVEQVMSEFV 67
           V  LS ++K AILLLSL   DAA +L+H+ PK+VQ+VG+AMA M +  +E+V  V   F+
Sbjct: 17  VKDLSGIEKTAILLLSLSEADAASILKHLEPKQVQKVGMAMAAMEDFGQEKVIGVHKLFL 76

Query: 68  DIVGDQTSLGVGSDDYVRKMLTQALGEDKANGLIDRILLGGNTSGLDSLKWMEPRAVADV 127
           D +   +S+G  S+++VRK LT ALGEDKA  LI++I++G    GLDSLKWM+ R VA +
Sbjct: 77  DDIQKYSSIGFNSEEFVRKALTAALGEDKAGNLIEQIIMGSGAKGLDSLKWMDARQVATI 136

Query: 128 IRYEHPQIQAIVVAYLDPDQAGEVLGNFDHKVRLDIILRVSSLNTVQPAALKELNQILEK 187
           I+ EHPQIQ IV++YL+PDQA E+ G F    RLD+++R+++L  VQPAAL+ELN I+EK
Sbjct: 137 IQNEHPQIQTIVLSYLEPDQAAEIFGQFPENTRLDLMMRIANLEEVQPAALQELNDIMEK 196

Query: 188 QFSGNSNASRTTLGGIKRAADIMNFLDSSIEGQLMDSIREFDEDLSGQIEDLMFVFNNLS 247
           QF+G   A    +GG+K AA+IMN+LD+ +E QLM+++RE DE+++ QI+DLMFVF NL 
Sbjct: 197 QFAGQGGAQAAKMGGLKAAANIMNYLDTGVESQLMETMRETDEEMAQQIQDLMFVFENLI 256

Query: 248 DVDDRGIQALLREVSSDVLVLALKGSDEGVKEKIFKNMSKRAAELLRDDLEAKGPVRVSD 307
           DVDDRGIQ LLREV  DVL+ ALKG+D+ +K+KI  NMSKRAAELLRDDLEA GP+R+S+
Sbjct: 257 DVDDRGIQTLLREVQQDVLMKALKGADDQLKDKILGNMSKRAAELLRDDLEAMGPIRISE 316

Query: 308 VETAQKEILTIARRMAEAGEIVLGGKGGEEMI 339
           VE AQKEIL+IARR++++GEI+LGG GG+E +
Sbjct: 317 VEIAQKEILSIARRLSDSGEIMLGGGGGDEFL 348