Pairwise Alignments

Query, 322 a.a., Flagellar motor switch protein FliM from Pseudomonas fluorescens FW300-N2E2

Subject, 341 a.a., flagellar motor switch protein FliM (RefSeq) from Shewanella loihica PV-4

 Score =  417 bits (1072), Expect = e-121
 Identities = 196/320 (61%), Positives = 261/320 (81%), Gaps = 3/320 (0%)

Query: 3   VQDLLSQDEIDALLHGVDDGLVQTENAAEPGSVKSYDLTSQDRIVRGRMPTLEMINERFA 62
           + DLLSQDEIDALLHGVDD  V+ E  ++    ++YD +SQDRIVRGRMPTLE++NERFA
Sbjct: 1   MSDLLSQDEIDALLHGVDD--VEEEEVSDALDARAYDFSSQDRIVRGRMPTLEIVNERFA 58

Query: 63  RYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKL 122
           R+ RISMFNM+RR+A+V++ GVQ++KFGEYVH+L+VPTSLN+V+  PL+GTAL  ++A+L
Sbjct: 59  RHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARL 118

Query: 123 VFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIMEVNFEYINS 181
           VF LVDNFFGGDGR HAKIEGREFTPTE R+V+++L+  F D KEAW  +M+V F+Y++S
Sbjct: 119 VFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMDVEFDYLDS 178

Query: 182 EVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQD 241
           EVNPAMANIV P+E +VVS+FHIE+DGGGGD H+TMPYSMIEP+RE+LDAG QSD  D D
Sbjct: 179 EVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTD 238

Query: 242 ERWINALRQDVLDVDVPIGATVARRQLRLRDILHMQPGDIIPVEMPEDMIMRANGVPAFK 301
            RW  AL+ +++DV+V + AT+  +++ L+D++  + GDIIPVEMPE +++R   +P ++
Sbjct: 239 MRWSQALKDEIMDVEVGLDATIVEKEISLKDVMGFKAGDIIPVEMPEYIVLRVEDLPTYR 298

Query: 302 VKMGSHKGNLALQVIEPIER 321
            K+G  + NLAL + E I R
Sbjct: 299 CKLGRSRENLALNIREKIPR 318