Pairwise Alignments

Query, 322 a.a., Flagellar motor switch protein FliM from Pseudomonas fluorescens FW300-N2E2

Subject, 343 a.a., flagellar motor switch protein FliM (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  413 bits (1061), Expect = e-120
 Identities = 196/320 (61%), Positives = 256/320 (80%), Gaps = 1/320 (0%)

Query: 3   VQDLLSQDEIDALLHGVDDGLVQTENAAEPGSVKSYDLTSQDRIVRGRMPTLEMINERFA 62
           + DLLSQDEIDALLHGVDD     E  A     +SYD +SQDRIVRGRMPTLE++NERFA
Sbjct: 1   MSDLLSQDEIDALLHGVDDVEEDNELDAVGQEARSYDFSSQDRIVRGRMPTLEIVNERFA 60

Query: 63  RYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKL 122
           R+ RISMFNM+RR+A+V++ GVQ++KFGEYVH+L+VPTSLN+V+  PL+GTAL  ++A+L
Sbjct: 61  RHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARL 120

Query: 123 VFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIMEVNFEYINS 181
           VF LVDNFFGGDGR HAKIEGREFTPTE R+V+++L+  F D K+AW  +M+V F+Y++S
Sbjct: 121 VFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVEFDYLDS 180

Query: 182 EVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQD 241
           EVNPAMANIV P+E +V+++FHIE+DGGGGD H+TMPYSMIEP+RE+LDAG QSD  D D
Sbjct: 181 EVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTD 240

Query: 242 ERWINALRQDVLDVDVPIGATVARRQLRLRDILHMQPGDIIPVEMPEDMIMRANGVPAFK 301
            RW  AL  +++DV V   ATV   +L L+D+++ + GDIIP+E+PE ++MR   +P ++
Sbjct: 241 MRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPEYIMMRIEDLPTYR 300

Query: 302 VKMGSHKGNLALQVIEPIER 321
            KMG  + NLAL++ E I R
Sbjct: 301 CKMGRSRDNLALKIYEKIPR 320