Pairwise Alignments

Query, 152 a.a., Flagellar motor switch protein FliN from Pseudomonas fluorescens FW300-N2E2

Subject, 127 a.a., flagellar motor switch protein (RefSeq) from Shewanella loihica PV-4

 Score =  147 bits (371), Expect = 6e-41
 Identities = 85/149 (57%), Positives = 102/149 (68%), Gaps = 23/149 (15%)

Query: 5   MNTQDDQALADEWAAALEETGDAGQADIDALLAADTGAHASSRLQMEEFGSVPKSHEPVT 64
           M+T+D     D+WAAA+ E                    A    Q  E   +  S +P+T
Sbjct: 1   MSTEDT---GDDWAAAMAE-------------------QALEEAQAVELDELADSSKPLT 38

Query: 65  LD-GPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIA 123
            +    LD I+DIPV+ISMEVG + INIRNLLQLNQGSV+ELDR+AGEPLDV+VNGTLIA
Sbjct: 39  EEEAAKLDTIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIA 98

Query: 124 HGEVVVVNEKFGIRLTDVISPSERIKKLR 152
           HGEVVVVN+KFGIRLTDVIS +ERIKKL+
Sbjct: 99  HGEVVVVNDKFGIRLTDVISQTERIKKLK 127