Pairwise Alignments

Query, 152 a.a., Flagellar motor switch protein FliN from Pseudomonas fluorescens FW300-N2E2

Subject, 124 a.a., flagellar motor switch protein FliN (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  140 bits (354), Expect = 5e-39
 Identities = 80/141 (56%), Positives = 98/141 (69%), Gaps = 24/141 (17%)

Query: 15  DEWAAALEETG--DAGQADIDALLAADTGAHASSRLQMEEFGSVPKSHEPVT-LDGPNLD 71
           D+WAAA+ E    +A    +D L+                        +P++  +   LD
Sbjct: 5   DDWAAAMAEQALEEANAVGLDELV---------------------DDSQPISKAEAAKLD 43

Query: 72  VILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVN 131
            ILDIPV+ISMEVG + I+IRNLLQLNQGSV+ELDR+AGEPLDV+VNGTLIAHGEVVVVN
Sbjct: 44  TILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVN 103

Query: 132 EKFGIRLTDVISPSERIKKLR 152
           +KFGIRLTDVIS +ERIKKL+
Sbjct: 104 DKFGIRLTDVISQTERIKKLK 124