Pairwise Alignments

Query, 378 a.a., Flagellar biosynthesis protein FlhB from Pseudomonas fluorescens FW300-N2E2

Subject, 346 a.a., type III secretion protein, hrpY/hrcU family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  174 bits (440), Expect = 4e-48
 Identities = 111/348 (31%), Positives = 190/348 (54%), Gaps = 8/348 (2%)

Query: 9   DKTEDPTEKRLRESREKGEIARSKELNTLAVMLAGAGGLLIYGGGLALDLLEIMRLNF-- 66
           DKTE PT KRLRE+REKG+I +S+++ +   +LA AG     G  +   L+E+  L+   
Sbjct: 3   DKTEQPTPKRLREAREKGDICKSQDIGSAVTVLAVAGYFAFAGESIFASLMEVTELSMRH 62

Query: 67  -SLPREVLLSPGAMGQYLLHSGKIAILSVQPVLLFLLLAAIIGPISLGGWLFAGKSLAPK 125
            ++P +  L    +G  ++H+   A+  V PV+   ++AA +G ++  G LFA K   PK
Sbjct: 63  MAMPFDEALP--LLGTAVVHA---AVGIVLPVVGLAMMAAFLGTLAQTGVLFAFKGAMPK 117

Query: 126 FSRMNPAAGIKRMFSTTALMELLKAFGKFLLILFVALTVLQSDIDDLLRIAHEPLEQAII 185
              ++P    K++FS    +ELLK   K  ++ +    V+   +  L  I    +   + 
Sbjct: 118 LENISPGKWFKKVFSMRNAVELLKNCIKVGVLGWAVWKVMSDHMRGLFSIPDGDIGLLLK 177

Query: 186 HSVQLVGWSTLWMACGLILIAAIDVPIQLYQSKQKLMMTKQEIRDEHKDQEGKPEVKQRI 245
                     L  A    +IAA+D   Q +Q  ++ MMTK E++ E+K+ EG P +K + 
Sbjct: 178 VLGTAARDMVLMAAVVFCVIAALDYLYQRWQYNKQHMMTKDEVKREYKEMEGDPHIKGKR 237

Query: 246 RQLQREVSQRRMMAAIPDADVVITNPTHYAVALKYDPEKGNAPVLLAKGSDFLALKIREI 305
           +QL +E+  +  ++ +  A V++TNPTH+AVAL Y+ ++   PV+LAKG   +A ++ EI
Sbjct: 238 KQLHQEMLAQNTLSNVRKAKVIVTNPTHFAVALDYEKDRTPLPVILAKGEGLMARRMVEI 297

Query: 306 AVANEVMLLESPALARSIYYSTELDQEIPGGLYLAVAQVLAYVYQIRQ 353
           A    + ++++  LARS++     +  IP  L   VA+VL +V  +++
Sbjct: 298 AREEGIPVMQNVPLARSLFAEGTENAYIPKELIGPVAEVLRWVQSLQE 345