Pairwise Alignments

Query, 710 a.a., Flagellar biosynthesis protein FlhA from Pseudomonas fluorescens FW300-N2E2

Subject, 697 a.a., type III secretion inner membrane protein, HrcV family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  413 bits (1061), Expect = e-119
 Identities = 253/697 (36%), Positives = 406/697 (58%), Gaps = 25/697 (3%)

Query: 7   LFSTARSNVVDLSRGN-LGVPLLLLVMLAMMMLPVPPFLLDVFFTFNIALSIVVLLVCVY 65
           + + A + V  ++R N L + LLL+V++A+M+LP+P  L+D     N+ALS V+L++ +Y
Sbjct: 3   MLARANTAVGAVTRHNDLAIVLLLVVVIALMILPLPTPLVDTLIGANMALSFVMLMMSMY 62

Query: 66  ALRPLDFAVFPTILLVATLLRLALNVASTRVVMLHGQDGHAAAGKVIQAFGEVVIGGNYV 125
               LDF+VFPT+LL  TL R+ LN+ +TR+++L      A AG++I  FGE  +GGN+V
Sbjct: 63  VKSILDFSVFPTMLLFTTLFRVGLNITTTRLILLQ-----ADAGEIIFVFGEYALGGNFV 117

Query: 126 VGIVVFAILMIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQGQAKLR 185
           VG VVF IL I+ F+V+ KGA R++EV ARFTLDAMPGKQM+IDAD+ AG+ID  +A+ R
Sbjct: 118 VGAVVFVILTIVQFLVIAKGAERVAEVGARFTLDAMPGKQMSIDADMRAGVIDMEEAQRR 177

Query: 186 RLEVAQEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGMAVGIFQHNMTFGDAGKVYAL 245
           R  V+QE++ YG+MDGA KFV+GD+IAG+++  +N++GG  +GI QH M  G+A   Y +
Sbjct: 178 RNTVSQESQMYGAMDGAMKFVKGDSIAGMIVALVNIVGGTVIGITQHGMAAGEALHTYGI 237

Query: 246 LTIGDGLVAQLPSLLLSTAAAIMVTRASGS-EDMGKQIGRQMFASPKALAVAAGLMAVMG 304
           LTIGDGLV+Q+PSLL+S +A I++TR+  S  ++G QIG Q+F  PKAL +A GL+ +  
Sbjct: 238 LTIGDGLVSQIPSLLVSISAGILITRSGDSGGNVGAQIGGQIFGQPKALLMAGGLVFLFA 297

Query: 305 LVPGMPHISFLTMAAAAAGGAYLFWK-KQNAQKVQALQEVKRQQELLPSPARAMETKELG 363
           LVPG P    + +A A  G  Y+  +  +   +     E+ R       P  A    + G
Sbjct: 298 LVPGFPKPQLMGLALALGGFGYVLRRMAELPAETDPRAELSRSLAPAVKPRPARGGAQQG 357

Query: 364 WDDVTPIDMIGLEVGYRLIPLVDRNQGGQLLARIKGVRKKLSQDLGFLMPTVHIRDNLDL 423
            DD  P   I L++   L   +D +     LAR+   R+ L  DLG   P +++R N  L
Sbjct: 358 -DDFAPTVPIILDLSPALGESLDYDSLNDELARL---RRALYFDLGVPFPGINVRPNPAL 413

Query: 424 APSAYRLTLMGVILAEAEIYPDRELAINPGQVYGSLNGITAKDPAF--GLEAVWIEISQR 481
               Y L L  + ++   +     L  +  +    +     +   F   +E +W+   Q 
Sbjct: 414 PGLCYVLNLNEIPMSRGVLEKGMSLVRDTRENLAMMGVAVREGERFLPEVEPLWVPDEQC 473

Query: 482 AQAQSLGYTVVDASTVVATHLNQILYKHSSELIGHEEVQQLLQVLAKGSPKLAEELVPGV 541
              +  G   +  + ++A HL+ +L +H+S  IG +E + LL  + + +P L  E V  +
Sbjct: 474 RLLEKAGIGHMSHARILAYHLSLVLSRHASTFIGMQEAKYLLDRMEERAPDLVRE-VTRL 532

Query: 542 VSLSQLLKVLQALLAEQVPVRDIRSIAEAIANNASKSQDTAALVAAVRVGVSRAIVQSIV 601
           + + ++ ++ Q L+ EQV +RD+RSI EA+   ++K +DT  L   VR  + R I     
Sbjct: 533 LPVQRIAEIFQRLVQEQVSIRDLRSILEALIEWSAKEKDTVMLTEYVRSALKRQISYMHS 592

Query: 602 GTESELPVITLEPRLEQILLNSLQKAGQGSEEGVLLEPSMAEKLQRSLIEAAQRQEMQGQ 661
             ++ LP I L+P +E+ +  ++++   G+   + LEP++ E+  +++ +AA     Q Q
Sbjct: 593 RGQNMLPAILLDPGVEETIRKAVRQTSAGA--FLALEPAVTERFMKAVADAAGPYAQQTQ 650

Query: 662 PVILLVAGPIRAMLSRFGRLAVPGLH----VLAYQEI 694
             +++ +  IR    R+ R  + G H    V++YQE+
Sbjct: 651 KPVIMTSMDIR----RYVRRLIEGDHYTLAVMSYQEL 683