Pairwise Alignments

Query, 247 a.a., RNA polymerase sigma factor for flagellar operon from Pseudomonas fluorescens FW300-N2E2

Subject, 246 a.a., RNA polymerase sigma factor, FliA/WhiG family from Dechlorosoma suillum PS

 Score =  231 bits (589), Expect = 1e-65
 Identities = 119/237 (50%), Positives = 168/237 (70%), Gaps = 3/237 (1%)

Query: 9   LYKKSARDAQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSNKYDASK 68
           +Y  + +  + +L++R+APLVKRIAYHL+ARLP+SVQVEDL+Q GMIGLL+  N+++   
Sbjct: 1   MYNAAGQLDKEQLVQRFAPLVKRIAYHLMARLPSSVQVEDLVQNGMIGLLDAMNRFETGH 60

Query: 69  GASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDAKDHEVAAE 128
           GA FETYA  RIRGAMLD +R+ DW PR + R+ R +  AI  +E + GR   + E+A  
Sbjct: 61  GAQFETYAAQRIRGAMLDGLRENDWLPRGLRRDLRRIEQAITQLEQEHGRVPTEKELAEA 120

Query: 129 LQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDNASAH-MEPSRDLEDERFQSAL 187
           + +SL DY  +L +  G +L  F+D  ++GE EG  E + + H  +P R LE++  +  L
Sbjct: 121 MDMSLADYQKMLGEARGHQLLYFEDFTEEGE-EGFLERHLTDHDADPLRLLEEQSLRQTL 179

Query: 188 ADAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGR-LGE 243
             +I  LPERE+L++ALYY+++LNL+EIGEV+GV+ESRV QLHSQ  ARLR + LGE
Sbjct: 180 VASIGELPEREKLMMALYYEQDLNLREIGEVMGVTESRVCQLHSQAIARLRAKVLGE 236