Pairwise Alignments

Query, 267 a.a., Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

Subject, 262 a.a., flagellar biosynthesis protein FliR (RefSeq) from Shewanella amazonensis SB2B

 Score = 73.2 bits (178), Expect = 5e-18
 Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 9/214 (4%)

Query: 22  RLAPIFFMLPFLNSGVLTGVARQAVIVLVALGFWA---YVGVPTPALDSLAFLGLMLREV 78
           R++ +F ++P    G  T   R  +++ VA+ F        +P   L +L+ + +  ++V
Sbjct: 21  RISAMFMVMPVF--GANTTPVRVRLLLSVAVTFAVSPMLPPMPQGELFALSSVFISAQQV 78

Query: 79  SIGVLLGVLLCWPFWVLHAMGNLIDNQRGAMLSSTVDPANGVDTSELANFLQLFAAAVYL 138
            IGV +G++      +    G +I  Q     S  VDP +G  T  L NF  L A  ++L
Sbjct: 79  LIGVAMGLVALMMLQIFVLTGQIIGMQTSLGFSFMVDPGSGQQTPVLGNFFLLLATLIFL 138

Query: 139 EGGGMLLMLETVAQSYRICAPANDCAIHLSALHALL---DVLVSKTLVISAPVVATLLVS 195
              G L M+  +  S+    P +   I L+  H+L      +    L +S   +  LL+ 
Sbjct: 139 AVDGHLTMIRMLVMSFD-TLPVSMTGITLANYHSLALWGSYMFGAALTMSLSAIVALLLI 197

Query: 196 EALLGLLSRYAPQMNAFSVSLTVKSLVALVVLML 229
               G+++R APQ+N F++   V  +  L +L L
Sbjct: 198 NLSFGVMTRAAPQLNIFAIGFPVVMISGLFILWL 231