Pairwise Alignments

Query, 267 a.a., Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

Subject, 265 a.a., flagellar biosynthesis protein FliR (RefSeq) from Shewanella loihica PV-4

 Score = 63.9 bits (154), Expect = 3e-15
 Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 7/200 (3%)

Query: 36  GVLTGVARQAVIVLVALGFWAYVGVPTPA---LDSLAFLGLMLREVSIGVLLGVLLCWPF 92
           G  T   R  +++ VA+ F     +P      L SL  + + ++++ IGV +G +     
Sbjct: 33  GANTTPTRVRLLLSVAITFAIAPMLPVNTEVELFSLGAVFVTVQQILIGVAMGFVTLLIM 92

Query: 93  WVLHAMGNLIDNQRGAMLSSTVDPANGVDTSELANFLQLFAAAVYLEGGGMLLMLETVAQ 152
                 G +I  Q     +S VDP +G  T  + NF  L    ++L   G L+M+  +  
Sbjct: 93  QTFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGNFFLLLTTMIFLAVDGHLVMIRMLVA 152

Query: 153 SYRICAPANDCAIHLSALHALLD---VLVSKTLVISAPVVATLLVSEALLGLLSRYAPQM 209
           S+    P +   I +++   L +    +    L +S   +  LL+     G+++R +PQ+
Sbjct: 153 SFD-TIPVSMQGISIASYRRLAEWGAYMFGAALTMSISAIVALLLINLSFGVMTRASPQL 211

Query: 210 NAFSVSLTVKSLVALVVLML 229
           N F++   V  +  L++L L
Sbjct: 212 NIFAIGFPVTMVSGLIILWL 231