Pairwise Alignments

Query, 267 a.a., Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

Subject, 265 a.a., flagellar biosynthetic protein FliR (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 69.7 bits (169), Expect = 6e-17
 Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 9/201 (4%)

Query: 36  GVLTGVARQAVIVLVALGFWAYVGVPTPALD----SLAFLGLMLREVSIGVLLGVLLCWP 91
           G  T   R  +++ +A+   A   V  P  D    SL+ + +  +++ IGV +G +    
Sbjct: 33  GAATTPTRVRLLLAIAITL-AIAPVLPPVKDAQLFSLSAVFITAQQIIIGVAMGFVTQMV 91

Query: 92  FWVLHAMGNLIDNQRGAMLSSTVDPANGVDTSELANFLQLFAAAVYLEGGGMLLMLETVA 151
                  G +I  Q     +S VDP++G  T  + NF  L A  ++L   G LLM+  + 
Sbjct: 92  MQTFVLTGQIIGMQTSLGFASMVDPSSGQQTPVIGNFFLLLATLIFLAVDGHLLMIRMLV 151

Query: 152 QSYRICAPANDCAIHLSALHALLD---VLVSKTLVISAPVVATLLVSEALLGLLSRYAPQ 208
            S+    P ++  + L++  +L +    +    L +S   +  LL+     G+++R APQ
Sbjct: 152 ASFD-TLPISNVGLTLTSYRSLAEWGSYMFGAALTMSLSAIIALLLVNLSFGVMTRAAPQ 210

Query: 209 MNAFSVSLTVKSLVALVVLML 229
           +N FS+   +  +  L++L L
Sbjct: 211 LNIFSIGFPITMIGGLLILWL 231