Pairwise Alignments

Query, 267 a.a., Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

Subject, 271 a.a., type III secretion inner membrane protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  101 bits (252), Expect = 1e-26
 Identities = 67/238 (28%), Positives = 122/238 (51%), Gaps = 17/238 (7%)

Query: 9   LYAGFAAALLGVARLAPIFFMLPFLNSGVLTGVARQAVIVLVALGFWAYV--GVPTPALD 66
           +Y    A L+G+ RL  I  + PF+   V++G  R  ++    L     +   +P   + 
Sbjct: 12  VYDHMLALLVGMPRLFVIAQVAPFMGGNVVSGQLRLVLVFACYLPLHPVIVGQLPHGHIF 71

Query: 67  SLAFLG----LMLREVSIGVLLGVLLCWPFWVLHAMGNLIDNQRGAMLSSTVDPANGVDT 122
             + +G    L+L+E  +G+L+G+L    FW + + G LIDNQRGA ++   DP +G  T
Sbjct: 72  DPSLMGHYGALLLKETLLGLLMGLLAGMAFWAVQSAGFLIDNQRGASMAEESDPMSGEQT 131

Query: 123 SELANFLQLFAAAVYLEGGGMLLMLETVAQSYRICAPAN--------DCAIHLSALHALL 174
           S    FL      ++   G  +  L  +  SY +    +        D  ++ +   A  
Sbjct: 132 SPTGAFLLQVMMYLFYASGAFVAFLGLLYTSYEVWPVPSLTPLSWRADLPLYFAGKVAW- 190

Query: 175 DVLVSKTLVISAPVVATLLVSEALLGLLSRYAPQMNAFSVSLTVKSLVALVVLMLYFG 232
             L++  L+++ P++   L+++  LGL++R+A Q+N + +++ VKS VA ++L+LYFG
Sbjct: 191 --LMTHMLLLAGPIMVACLLADLSLGLVNRFASQLNVYVLAMPVKSAVASLLLLLYFG 246