Pairwise Alignments

Query, 267 a.a., Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

Subject, 263 a.a., flagellar biosynthetic protein FliR (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 83.6 bits (205), Expect = 4e-21
 Identities = 56/222 (25%), Positives = 109/222 (49%), Gaps = 6/222 (2%)

Query: 17  LLGVARLAPIFFMLPFLNSGVLTGVARQAVIVLVALGFWAYVGVPTPALDSLAF--LGLM 74
           LL   R++ + F+LPF     +    + A+ +++A+  W  + +    + S  F  + ++
Sbjct: 15  LLTFMRVSLVMFLLPFFGGDAVPMQVKVALCLVMAMALWPRLSLAGAVMPSHPFELVVML 74

Query: 75  LREVSIGVLLGVLLCWPFWVLHAMGNLIDNQRGAMLSSTVDPANGVDTSELANFLQLFAA 134
             E+ +G++LG+ + + F  +   G L+  Q G  + S  DP +G   S  ++FL + + 
Sbjct: 75  ASELVLGLVLGMAVHFLFAGIQTGGQLLGFQMGFTMISIADPLSGAQISITSHFLYMVSL 134

Query: 135 AVYLEGGGMLLMLETVAQSYRICAPANDCAIHLSALHALLDVLVSKTLV---ISAPVVAT 191
             +L   G L +L   A+S+ +  PA     + +  + L+ +     ++   I+APV+ T
Sbjct: 135 LTFLALDGHLFLLRAFAESFAL-VPAGGLVANPAVANELVRLAGGMFVIAVKIAAPVLVT 193

Query: 192 LLVSEALLGLLSRYAPQMNAFSVSLTVKSLVALVVLMLYFGV 233
           L + E  L L++R APQMN   +   +K  V    + L F +
Sbjct: 194 LFLVELALALMARAAPQMNLLMIGFPLKIAVGFFFMGLLFTI 235