Pairwise Alignments

Query, 344 a.a., Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

Subject, 380 a.a., Flagellar biosynthesis pathway, component FlhB from Pseudomonas stutzeri RCH2

 Score =  128 bits (321), Expect = 3e-34
 Identities = 100/354 (28%), Positives = 171/354 (48%), Gaps = 20/354 (5%)

Query: 2   SSSASKTEKPTAKRLRDAARKGQTFKAKDLVITCLTLCGISYLVFNSSLF------EIME 55
           +SS  KTE+ + ++L+ +   GQ  ++KD+  T   L  +  L  ++ +F          
Sbjct: 5   NSSQEKTEEASEQKLKKSRDDGQVTRSKDVATTVSLLATLLLLKLSAGVFLDGMQQSFSY 64

Query: 56  VYRRIIASDFDVE-LQTYSAMLVLVGLKTLLPLLLVCVLTSALPALLQSGFALASEALKL 114
            Y     S+  ++ +Q      +LV +  LLPLLL  +L  A  AL+  G+  AS+    
Sbjct: 65  SYINFQQSEIGIDDVQVILLHNLLVFVSVLLPLLLTPILVIAF-ALVPGGWVFASKNFAP 123

Query: 115 NLGALNPINGFKKLFSLRTVKDTFKALLYLGSF-AMALWIVWVTQRQLLFAQLFAQAADL 173
           N G LNPI G  ++   +   +  K+LL + +   +A W ++    +L+  Q      D+
Sbjct: 124 NFGKLNPITGLGRMVGAQNWSELAKSLLKISALLGIAGWQLYYAAPRLIALQ----RTDI 179

Query: 174 F-AIWGHLLLVLVLAFLACILLIVVLDALSEYGL----FMKDQMMDKDAVKREHKEQDGN 228
           F AI G   L   LAF   +LL+ VL +  +  L    F+K   M K   K EHK Q+G 
Sbjct: 180 FNAIGGAFSLTFDLAF--SLLLVFVLFSFIDIPLQRFFFLKKMRMTKQERKEEHKNQEGR 237

Query: 229 PQIKGRRRDLHMELLSEQVKSDVRSSRMIIANPTHIAIGVYFRPEITLLPFISLMETNQR 288
           P++K R + L  +L   Q+   ++ + ++I NPTH A+ + + P+    PF+     ++ 
Sbjct: 238 PEVKARIKQLQRQLAQRQITKVIKEADVVIVNPTHYAVALKYDPKKAETPFVIARGVDEM 297

Query: 289 ALAVRAYAKAVGVPVINDKALARRIFKTHQRYSFLQVQEVEEVLRLLIWLEQVE 342
           AL +R  A+A  + VI    LAR I+ + Q    +       V  +L ++ Q++
Sbjct: 298 ALYIRKMAQANALEVIELPPLARAIYYSTQVNQQIPAPLYTAVAHVLTYILQLK 351