Pairwise Alignments

Query, 344 a.a., Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

Subject, 354 a.a., EscU/YscU/HrcU family type III secretion system export apparatus switch protein from Ralstonia solanacearum IBSBF1503

 Score =  161 bits (407), Expect = 3e-44
 Identities = 105/347 (30%), Positives = 178/347 (51%), Gaps = 12/347 (3%)

Query: 4   SASKTEKPTAKRLRDAARKGQTFKAKDLVITCLTLCGISYLVFNSSLFEIMEVYRRIIAS 63
           S  KTE+PT K+L DA + G+T K+ DL    + L G   L   ++ F   + +R ++  
Sbjct: 2   SDEKTEQPTDKKLEDAHKDGETAKSADLTAAVVLLSGCLLLSMTATFFG--DRWRALLDL 59

Query: 64  DFDVE-----LQTYSAMLVLVGLKTLL---PLLLVCVLTSALPALLQSGFALASEALKLN 115
             DV+     + T    L  V L+ +L   P+  V  L + +    Q+G  L+ + ++L 
Sbjct: 60  ALDVDGSRHPVMTLKQTLGHVALQLVLMTLPVGFVFALIAWIATWAQTGVVLSFKPVELK 119

Query: 116 LGALNPINGFKKLFSLRTVKDTFKALLYLGSFAMALWIVWVTQRQLLFAQLFAQAADLFA 175
           + A+NP +G K++FS+R++ D  K L+   +   A+W + +     +    +    D+  
Sbjct: 120 MNAINPASGLKRIFSMRSMIDLLKMLIKAAAVVAAVWKLIMILMPAIVGAAYQSVMDIAE 179

Query: 176 IWGHLLLVLVLAFLACILLIVVLDALSEYGLFMKDQMMDKDAVKREHKEQDGNPQIKGRR 235
           I   LL+ L+ A     L++   D   +  LF++D  M KD VKREHK  +G+P IKG R
Sbjct: 180 IGMTLLVRLLAAGGGLFLILGAADFGIQRWLFIRDHRMSKDEVKREHKNSEGDPHIKGER 239

Query: 236 RDLHMELLSE-QVKSDVRSSRMIIANPTHIAIGVYFRPEITLLPFISLMETNQRALAVRA 294
           + L  EL  E + K  V  ++ ++ NPTH A+ + + PE   LP I     +  ALA+R 
Sbjct: 240 KKLARELAEEAKPKQSVAGAQAVVVNPTHYAVAIRYAPEEYGLPRIIAKGVDDEALALRE 299

Query: 295 YAKAVGVPVINDKALARRIFKTHQRYSFLQVQEVEEVLRLLIWLEQV 341
            A A+G+P++ +  LAR +++    Y  +     E V  +L W+ ++
Sbjct: 300 EATALGIPIVGNPPLARALYRV-DLYGAVPEALFETVAEVLAWVGEM 345