Pairwise Alignments

Query, 344 a.a., Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

Subject, 376 a.a., flagellar biosynthetic protein FlhB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  115 bits (287), Expect = 2e-30
 Identities = 81/325 (24%), Positives = 160/325 (49%), Gaps = 15/325 (4%)

Query: 3   SSASKTEKPTAKRLRDAARKGQTFKAKDLVITCLTLCGIS--YLVFNSSLFEIMEVYRRI 60
           SS  ++E+PT +RL  A  KGQ  ++K+L    + L   +  Y++       +  V+ R+
Sbjct: 5   SSGERSEEPTGRRLDQAREKGQVARSKELGTATVLLSAATGLYMLGPGIAKALSNVFERV 64

Query: 61  IASDFDVELQTYSAMLV--LVGLKT---LLPLLLVCVLTSALPALLQSGFALASEALKLN 115
              D      T     V  +VG +    LL ++L+ V+ + +  +   G   +++A+   
Sbjct: 65  FTMDRAAIFDTNQMFNVWGVVGSEIGWPLLKIMLLIVVVAFIGNVSLGGMNFSTQAMMPK 124

Query: 116 LGALNPINGFKKLFSLRTVKDTFKALLYLGSFAMALWIVWVTQRQLLFAQLFAQAADLFA 175
              ++PI GFK++F ++ + +  K +      A+A +++        F  +   +AD   
Sbjct: 125 ASKMSPIAGFKRMFGVQALVELTKGIAKFSVVALASYLLL----SHYFNDILLLSADHLP 180

Query: 176 --IWGHLLLVLVLAFLAC--ILLIVVLDALSEYGLFMKDQMMDKDAVKREHKEQDGNPQI 231
             ++  L L++ +  L C  +L+IVV+D   +     K   M K  VK E+K+ +G P++
Sbjct: 181 GNVYHALDLLVWMFILLCSSVLVIVVIDVPFQIWNHNKQLKMTKQEVKDEYKDTEGKPEV 240

Query: 232 KGRRRDLHMELLSEQVKSDVRSSRMIIANPTHIAIGVYFRPEITLLPFISLMETNQRALA 291
           KGR R +  EL   ++ ++V ++ +I+ NP H A+ + +  + +  PF+     ++ A  
Sbjct: 241 KGRVRQMQRELAQRRMMAEVPNADVIVVNPEHYAVAIKYDVKRSAAPFVIAKGVDEVAFK 300

Query: 292 VRAYAKAVGVPVINDKALARRIFKT 316
           +R  A+A  + ++    LAR I+ T
Sbjct: 301 IREVARAHNIAIVTAPPLARAIYHT 325