Pairwise Alignments

Query, 344 a.a., Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

Subject, 346 a.a., type III secretion protein, hrpY/hrcU family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  169 bits (428), Expect = 1e-46
 Identities = 103/344 (29%), Positives = 173/344 (50%), Gaps = 5/344 (1%)

Query: 5   ASKTEKPTAKRLRDAARKGQTFKAKDLVITCLTLCGISYLVFN-----SSLFEIMEVYRR 59
           + KTE+PT KRLR+A  KG   K++D+      L    Y  F      +SL E+ E+  R
Sbjct: 2   SDKTEQPTPKRLREAREKGDICKSQDIGSAVTVLAVAGYFAFAGESIFASLMEVTELSMR 61

Query: 60  IIASDFDVELQTYSAMLVLVGLKTLLPLLLVCVLTSALPALLQSGFALASEALKLNLGAL 119
            +A  FD  L      +V   +  +LP++ + ++ + L  L Q+G   A +     L  +
Sbjct: 62  HMAMPFDEALPLLGTAVVHAAVGIVLPVVGLAMMAAFLGTLAQTGVLFAFKGAMPKLENI 121

Query: 120 NPINGFKKLFSLRTVKDTFKALLYLGSFAMALWIVWVTQRQLLFAQLFAQAADLFAIWGH 179
           +P   FKK+FS+R   +  K  + +G    A+W V     + LF+        L  + G 
Sbjct: 122 SPGKWFKKVFSMRNAVELLKNCIKVGVLGWAVWKVMSDHMRGLFSIPDGDIGLLLKVLGT 181

Query: 180 LLLVLVLAFLACILLIVVLDALSEYGLFMKDQMMDKDAVKREHKEQDGNPQIKGRRRDLH 239
               +VL       +I  LD L +   + K  MM KD VKRE+KE +G+P IKG+R+ LH
Sbjct: 182 AARDMVLMAAVVFCVIAALDYLYQRWQYNKQHMMTKDEVKREYKEMEGDPHIKGKRKQLH 241

Query: 240 MELLSEQVKSDVRSSRMIIANPTHIAIGVYFRPEITLLPFISLMETNQRALAVRAYAKAV 299
            E+L++   S+VR +++I+ NPTH A+ + +  + T LP I        A  +   A+  
Sbjct: 242 QEMLAQNTLSNVRKAKVIVTNPTHFAVALDYEKDRTPLPVILAKGEGLMARRMVEIAREE 301

Query: 300 GVPVINDKALARRIFKTHQRYSFLQVQEVEEVLRLLIWLEQVEQ 343
           G+PV+ +  LAR +F      +++  + +  V  +L W++ +++
Sbjct: 302 GIPVMQNVPLARSLFAEGTENAYIPKELIGPVAEVLRWVQSLQE 345