Pairwise Alignments

Query, 344 a.a., Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) from Pseudomonas fluorescens FW300-N2E2

Subject, 357 a.a., flagellar biosynthetic protein FlhB (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  112 bits (280), Expect = 1e-29
 Identities = 89/341 (26%), Positives = 161/341 (47%), Gaps = 8/341 (2%)

Query: 6   SKTEKPTAKRLRDAARKGQTFKAKDLVITCLTLCGISYLVFNSSLFE--IMEVYRRIIAS 63
           S+TE+ T KRL  A  KG   K++++     T  G+  + F   +    + EV+R  ++ 
Sbjct: 7   SRTEQATRKRLNKARNKGNVAKSQEVSKAVTTFAGLVAITFMLGVLNEHMQEVFRFFLSR 66

Query: 64  DFDV---ELQTYSAMLVLVGLKT--LLPLLLVCVLTSALPALLQSGFALASEALKLNLGA 118
             D    E   YS +L   G     LLP++L   L + +   LQ G    +E  KL+   
Sbjct: 67  PHDFTPNEQTVYSLLLWSAGELAIMLLPIMLFIGLAAFIAMRLQVGKLWTTEVFKLDWSR 126

Query: 119 LNPINGFKKLF-SLRTVKDTFKALLYLGSFAMALWIVWVTQRQLLFAQLFAQAADLFAIW 177
            N IN  K++F S +T+    K+LL      +A  IV   +   L    FA  + +    
Sbjct: 127 FNVINALKRMFISPQTLIRLGKSLLQAVFIGIAPIIVLKQEMLNLLPLYFADMSGIAVYM 186

Query: 178 GHLLLVLVLAFLACILLIVVLDALSEYGLFMKDQMMDKDAVKREHKEQDGNPQIKGRRRD 237
                 +V   L  +++I  +D       + ++  M KD VK E K+ +G+P +K ++R 
Sbjct: 187 LETGARMVKYALVPMVIIAAVDLWYTRWDYNENLKMTKDEVKDERKQAEGDPVVKSQQRQ 246

Query: 238 LHMELLSEQVKSDVRSSRMIIANPTHIAIGVYFRPEITLLPFISLMETNQRALAVRAYAK 297
             M+++++++  +V ++ ++I NPTHIA+ + +       P +  M  +  A  +R  A+
Sbjct: 247 KMMKVMAQRMLKEVPTADVVITNPTHIAVALRYDVTAAPAPIVVAMGADHLAKRIREVAR 306

Query: 298 AVGVPVINDKALARRIFKTHQRYSFLQVQEVEEVLRLLIWL 338
              VP+  +K LAR ++K+ +    +  +  + V  +L  L
Sbjct: 307 EHNVPIRENKPLARALYKSVEVGDMIPAELYKAVAAILAGL 347