Pairwise Alignments

Query, 785 a.a., DNA ligase (EC 6.5.1.2) from Pseudomonas fluorescens FW300-N2E2

Subject, 681 a.a., DNA ligase (NAD(+)) (RefSeq) from Shewanella amazonensis SB2B

 Score =  616 bits (1589), Expect = e-180
 Identities = 334/603 (55%), Positives = 418/603 (69%), Gaps = 29/603 (4%)

Query: 4   VETRIQQLRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPELVTSDSPTQRVG 63
           V+  IQ+L  E+++HN  Y+V D PSIPDAEYDRL ++LKALE ++P+    DSPTQRVG
Sbjct: 14  VKAEIQRLTAEINRHNIAYYVQDAPSIPDAEYDRLMNQLKALEAEYPQFAEPDSPTQRVG 73

Query: 64  SMALSAFSQVRHEIPMLSLGNAFDEATMREFDRRVTEGLDLPMGDLLGGGAAVEYSCEPK 123
             AL+ F QV H  PMLSL NAF+E     FD+R+T+ +          G+ V Y  EPK
Sbjct: 74  GAALNKFEQVSHLKPMLSLDNAFNEEDFVAFDKRLTDKV----------GSQV-YCAEPK 122

Query: 124 LDGLAVSLLYQDGLLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPPLLEVRGEVY 183
           LDGLAVSL+Y++G+L R ATRGDG  GEDISVN+RT++++PL+LQG   P L+EVRGEV+
Sbjct: 123 LDGLAVSLIYRNGVLERAATRGDGAVGEDISVNMRTIKSVPLRLQGDDIPALVEVRGEVF 182

Query: 184 MSKAGFERLNATQLEAGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVTTD-- 241
           M +A FE LN      G K F NPRNAAAGSLRQLDSKITA R L F  Y +G V  D  
Sbjct: 183 MPRAAFEALNDRARAKGDKLFVNPRNAAAGSLRQLDSKITAERSLAFYAYALGVVQDDNG 242

Query: 242 ----IADTHIGNLKQLKAWGLPISRELKLAHGIDECLDYYRDIGERRNALPYEIDGVVFK 297
               +A TH G L++L A+GLP+S+E+KL  G+ E + YY DI +RR+ L +EIDGVV K
Sbjct: 243 ADLVLAPTHKGQLERLTAFGLPVSKEVKLCEGLAEVMAYYADILKRRDELAFEIDGVVIK 302

Query: 298 VNSIASQRELGFRAREPRWAIAHKFPASEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357
           VN I +Q++LGF AR PRWAIA KFPA EE+T L  V+FQVGRTGAVTPVARLKPV V G
Sbjct: 303 VNDIEAQQQLGFVARAPRWAIAFKFPAQEEMTVLEGVDFQVGRTGAVTPVARLKPVFVGG 362

Query: 358 VTVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVITERRPEHARPVAIPQQCPV 417
           VTV+NATLHN DE+ARLG+ IGDTVIIRRAGDVIPQ+V V+ ERRP+ A+ +  P  CPV
Sbjct: 363 VTVSNATLHNGDEIARLGVKIGDTVIIRRAGDVIPQIVAVVPERRPDEAQDILFPDNCPV 422

Query: 418 CGSHVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKS 477
           CGS VER            I   AV RC G L C AQ ++AI HF SR+AM I+G+G+K 
Sbjct: 423 CGSLVER------------IEGEAVARCSGGLFCEAQRREAIKHFASRKAMYIDGMGDKV 470

Query: 478 VEQLVDEGLVGSPADLYALTFEQVVDLEGFAELSSKNLLAAIVDSKKPSLARFIYALGIP 537
           VEQL+D+ LV SPADL+ L   ++  LE     S+ NL+AAI ++K  +L +F+YALGI 
Sbjct: 471 VEQLIDKELVESPADLFKLNVSKLTMLERMGTKSATNLVAAIEEAKTTTLPKFLYALGIR 530

Query: 538 DVGEETAKVLARSLGSLERVQAALPQVLTYLPDVGLEVAHEIHSFFEDPHNRQVIKDLLR 597
           +VGE TA  LA+   SLE ++ A    L  + DVG  VA  +  FF  PHN +VI  L+ 
Sbjct: 531 EVGEATAANLAKHFRSLEAIRDADVDALIQVEDVGTVVAQHVAHFFAQPHNLEVIDALIA 590

Query: 598 HGL 600
            G+
Sbjct: 591 AGV 593



 Score =  119 bits (298), Expect = 5e-31
 Identities = 79/171 (46%), Positives = 97/171 (56%), Gaps = 7/171 (4%)

Query: 611 EFSASTTLGGFLDKLDIPSVGPGGAQKLADKFGSLEAVMNADWLDMRQA--LPEKQANAV 668
           E + +TTL  FL  L I  VG   A  LA  F SLEA+ +AD   + Q   +    A  V
Sbjct: 513 EEAKTTTLPKFLYALGIREVGEATAANLAKHFRSLEAIRDADVDALIQVEDVGTVVAQHV 572

Query: 669 REFFANASNRQQAEAAERQLRDFGMHWQS-EKKVVEGLPEAGHTWVLTGSLELMSRDVAK 727
             FFA   N +  +A    L   G++W + EK   +  P  G TWVLTG+L  + R  AK
Sbjct: 573 AHFFAQPHNLEVIDA----LIAAGVNWPAIEKPSADAQPLLGQTWVLTGTLTSLGRTEAK 628

Query: 728 DKLESLGAKVAGSVSVKTHCVVAGPGAGSKLTKANELGLKVLDEEAFVAFL 778
            KLE+LGAKVAGSVS  THCVVAG  AGSKL KA ELG+ VLDE   +  +
Sbjct: 629 AKLEALGAKVAGSVSKNTHCVVAGEAAGSKLAKAQELGIPVLDEAGLIELI 679