Pairwise Alignments

Query, 785 a.a., DNA ligase (EC 6.5.1.2) from Pseudomonas fluorescens FW300-N2E2

Subject, 669 a.a., DNA ligase, NAD-dependent (RefSeq) from Shewanella loihica PV-4

 Score =  635 bits (1637), Expect = 0.0
 Identities = 343/614 (55%), Positives = 423/614 (68%), Gaps = 25/614 (4%)

Query: 1   MTAVETRIQQLRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPELVTSDSPTQ 60
           M A++  I+QL  EL+QHNYRY+V D PSIPDAEYDRL   L+ LE +HPEL  +DSPTQ
Sbjct: 1   MQAIQDEIKQLTDELNQHNYRYYVDDAPSIPDAEYDRLMRRLQELEAEHPELALADSPTQ 60

Query: 61  RVGSMALSAFSQVRHEIPMLSLGNAFDEATMREFDRRVTEGLDLPMGDLLGGGAAVEYSC 120
           RVG  ALS F+QV H  PMLSL N F E     F +RV        GD L    A  + C
Sbjct: 61  RVGGEALSKFNQVTHLKPMLSLDNVFSEEEFNAFYKRV--------GDKLPDTPA--FCC 110

Query: 121 EPKLDGLAVSLLYQDGLLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPPLLEVRG 180
           EPKLDGLAVS+LY+DG+  R ATRGDGT GEDI+ NVRT++++PL+L+GSG+PPLLEVRG
Sbjct: 111 EPKLDGLAVSILYRDGVFERAATRGDGTVGEDITENVRTIKSVPLRLRGSGFPPLLEVRG 170

Query: 181 EVYMSKAGFERLNATQLEAGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQV-- 238
           EV+M KA FE +N      G K F NPRNAAAGSLRQLDSKITA+R L F  Y +G V  
Sbjct: 171 EVFMPKAAFEAVNDKARAKGEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEP 230

Query: 239 -TTDIADTHIGNLKQLKAWGLPISRELKLAHGIDECLDYYRDIGERRNALPYEIDGVVFK 297
            T  +A +H   L QLK WG P+S E+K+   I   L YY+DI  RR+ L YEIDGVV K
Sbjct: 231 ETWPLAASHFEQLVQLKEWGCPVSSEVKVCADIPSVLAYYQDILTRRSELAYEIDGVVLK 290

Query: 298 VNSIASQRELGFRAREPRWAIAHKFPASEELTELLDVEFQVGRTGAVTPVARLKPVKVAG 357
           VN IA Q+ LGF A+ PRWA A+KFPA EE+T+L  V+FQVGRTGAVTPVARL+PV V G
Sbjct: 291 VNDIAQQQTLGFVAKAPRWATAYKFPAQEEITQLEGVDFQVGRTGAVTPVARLQPVFVGG 350

Query: 358 VTVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVITERRPEHARPVAIPQQCPV 417
           VTV+NATLHN DE+ARLG+MIGD+VIIRRAGDVIPQVV V+ E+RP  A+ +  P QCPV
Sbjct: 351 VTVSNATLHNADEIARLGVMIGDSVIIRRAGDVIPQVVAVVPEKRPSDAQAIQFPPQCPV 410

Query: 418 CGSHVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKS 477
           CGS VER            +   AV RC G L C AQ K+AI HF SR+A+DI+G+G+K 
Sbjct: 411 CGSDVER------------VEGEAVARCTGGLVCEAQRKEAIKHFASRKALDIDGMGDKV 458

Query: 478 VEQLVDEGLVGSPADLYALTFEQVVDLEGFAELSSKNLLAAIVDSKKPSLARFIYALGIP 537
           VEQL+D+ LV SPADL+ LT   +  L+     S+ NL+ A+  +K+ + ARF+Y+LGI 
Sbjct: 459 VEQLIDKELVASPADLFKLTASAITMLDRMGMKSATNLVNALEAAKQTTFARFLYSLGIR 518

Query: 538 DVGEETAKVLARSLGSLERVQAALPQVLTYLPDVGLEVAHEIHSFFEDPHNRQVIKDLLR 597
           +VGE TA  LA    +LE ++ A  +    + DVG+ VA  +  FFE PHN +VI  LL+
Sbjct: 519 EVGEATAANLANYFKTLEHLKQADAETFMKVDDVGVIVAQHLVHFFEQPHNLEVIDGLLQ 578

Query: 598 HGLEIQDQGELGAE 611
            G+   D  E+  E
Sbjct: 579 AGVHWPDIEEVAEE 592



 Score =  109 bits (273), Expect = 4e-28
 Identities = 73/171 (42%), Positives = 95/171 (55%), Gaps = 7/171 (4%)

Query: 611 EFSASTTLGGFLDKLDIPSVGPGGAQKLADKFGSLEAVMNADWLDMRQA--LPEKQANAV 668
           E +  TT   FL  L I  VG   A  LA+ F +LE +  AD     +   +    A  +
Sbjct: 501 EAAKQTTFARFLYSLGIREVGEATAANLANYFKTLEHLKQADAETFMKVDDVGVIVAQHL 560

Query: 669 REFFANASNRQQAEAAERQLRDFGMHWQSEKKVVE-GLPEAGHTWVLTGSLELMSRDVAK 727
             FF    N +  +     L   G+HW   ++V E  L   G TWVLTG+L  ++R+ AK
Sbjct: 561 VHFFEQPHNLEVIDG----LLQAGVHWPDIEEVAEEALSLKGQTWVLTGTLTQLNRNDAK 616

Query: 728 DKLESLGAKVAGSVSVKTHCVVAGPGAGSKLTKANELGLKVLDEEAFVAFL 778
            KL++LGAKVAGSVS  T C+VAG  AGSKLTKA ELG+KV+DE   +A L
Sbjct: 617 AKLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQELGVKVIDEAELLAIL 667