Pairwise Alignments

Query, 785 a.a., DNA ligase (EC 6.5.1.2) from Pseudomonas fluorescens FW300-N2E2

Subject, 808 a.a., DNA ligase, NAD-dependent (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  458 bits (1178), Expect = e-133
 Identities = 264/613 (43%), Positives = 367/613 (59%), Gaps = 41/613 (6%)

Query: 7   RIQQLRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPELVTSDSPTQRVGSMA 66
           R + LR +L+ H++RY+VLD+  I DAEYD LF EL+ +E + P L T DSPT RVG   
Sbjct: 36  RAEALRDQLNYHSHRYYVLDDAEISDAEYDALFRELQDIEAEWPSLRTPDSPTHRVGDTV 95

Query: 67  LSAFSQVRHEIPMLSLGNAFDEATMREFDRRVTEGLDLPMGDLLGGGAAVEYSCEPKLDG 126
           ++A     H + M SL NAF       F +R+               A   + C+PK+DG
Sbjct: 96  VAALETQAHTLRMYSLDNAFSAEEWDGFIQRMLRAEP---------DAPTAFWCDPKMDG 146

Query: 127 LAVSLLYQDGLLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSG-WPPLLEVRGEVYMS 185
           LA+ ++Y++G+     TRGDG  GE ++  +RTVRN+PL+L G G  P  LEVRGEV ++
Sbjct: 147 LALEVIYENGVFTTALTRGDGEKGEIVTTAMRTVRNLPLRLHGEGPHPARLEVRGEVVIT 206

Query: 186 KAGFERLNATQLEAGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQV-----TT 240
           +A F+ LNA +  AG K FANPRNAAAGS+RQLD+ +TA RPL F  YG+GQV     T+
Sbjct: 207 RAEFDALNAARRGAGEKLFANPRNAAAGSVRQLDASVTAGRPLRFLAYGVGQVVWPAETS 266

Query: 241 DIAD-----------THIGNLKQLKAWGLPISRELKLAHGIDECLDYYRDIGERRNALPY 289
           D A            TH   +  L  +G     + +      + + YY D+G RR+ LP+
Sbjct: 267 DGAASAAQGPEARWATHGQVMAALADYGFGTPPDARRCETPAQVMAYYEDLGRRRSELPF 326

Query: 290 EIDGVVFKVNSIASQRELGFRAREPRWAIAHKFPASEELTELLDVEFQVGRTGAVTPVAR 349
           +IDGVV K++ +++Q  LG+ AR PRWAIA KFPA +  T L  +  QVGRTG +TPVA 
Sbjct: 327 DIDGVVAKLDDLSAQAALGYTARAPRWAIALKFPAHQATTRLEHIAIQVGRTGVLTPVAE 386

Query: 350 LKPVKVAGVTVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVITERRPEHARP- 408
           L PV V GVTV+ ATLHN DE+    L +GD V+++RAGDVIP+VV+ + ++RP    P 
Sbjct: 387 LAPVAVGGVTVSRATLHNEDEIRAKDLRVGDMVVVQRAGDVIPEVVRPLVDQRPASGLPE 446

Query: 409 VAIPQQCPVCGSHVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAM 468
              P +CPVC + V      +R  G       A +RCV  + C A ++Q+IIHFVS+  +
Sbjct: 447 FEFPAECPVCHTPV------RREPGE------AAWRCV-NVGCPAVVRQSIIHFVSKAGL 493

Query: 469 DIEGLGEKSVEQLVDEGLVGSPADLYALTFEQVVDLEGFAELSSKNLLAAIVDSKK-PSL 527
           DI+G+G + VE LVD G V SPADL+ L  + ++  E      ++N +AA   ++   +L
Sbjct: 494 DIQGVGRRWVELLVDRGKVTSPADLFGLDKQTLLAFERMGPKLAENFIAAFDTARTGATL 553

Query: 528 ARFIYALGIPDVGEETAKVLARSLGSLERVQAALPQVLTYLPDVGLEVAHEIHSFFEDPH 587
            R I ALGI  VGE+TA+ LA     L+ + AA  + L  LPD+G EVA  I +FF +  
Sbjct: 554 NRLICALGIRHVGEQTARTLAAHFADLDALGAAQAETLQQLPDIGPEVAASIRAFFANEG 613

Query: 588 NRQVIKDLLRHGL 600
           NR +++ L   GL
Sbjct: 614 NRALLERLRGVGL 626



 Score = 73.2 bits (178), Expect = 5e-17
 Identities = 62/179 (34%), Positives = 89/179 (49%), Gaps = 19/179 (10%)

Query: 617 TLGGFLDKLDIPSVGPGGAQKLADKFGSLEAVMNADWLDMRQALPE---KQANAVREFFA 673
           TL   +  L I  VG   A+ LA  F  L+A + A   +  Q LP+   + A ++R FFA
Sbjct: 552 TLNRLICALGIRHVGEQTARTLAAHFADLDA-LGAAQAETLQQLPDIGPEVAASIRAFFA 610

Query: 674 NASNRQQAEAAERQLRDFGMHW-------QSEKKVVEGL---PEAGHTWVLTGSLELMSR 723
           N  NR   E    +LR  G+ W       +++     G    P AG   + TGSL  ++R
Sbjct: 611 NEGNRALLE----RLRGVGL-WPVRPVRPEADAAGAPGEGSGPLAGLRVLFTGSLTTLTR 665

Query: 724 DVAKDKLESLGAKVAGSVSVKTHCVVAGPGAGSKLTKANELGLKVLDEEAFVAFLSKHG 782
             A+ +  + GA + GSVS K   +V G   GSKL KA +LG++VL E+ F+  L   G
Sbjct: 666 SDAERRAVAAGANILGSVSKKLDLLVVGDKPGSKLDKATKLGIRVLREQEFLDLLEGRG 724