Pairwise Alignments

Query, 785 a.a., DNA ligase (EC 6.5.1.2) from Pseudomonas fluorescens FW300-N2E2

Subject, 741 a.a., DNA ligase, NAD-dependent (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  440 bits (1132), Expect = e-127
 Identities = 251/576 (43%), Positives = 342/576 (59%), Gaps = 37/576 (6%)

Query: 3   AVETRIQQLRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPELVTSDSPTQRV 62
           A    + +L   L + N  YH  D PS+ DA+YD L     A+E + P+L   DSP+ +V
Sbjct: 49  AARKELARLSELLARANAEYHRDDAPSLSDADYDALKQRNAAIEARFPDLKRGDSPSDQV 108

Query: 63  GSMALSAFSQVRHEIPMLSLGNAFDEATMREFDRRVTEGLDLPMGDLLGGGAAVEYSCEP 122
           G+     FS+V H + MLSL NAF +  +R+FD R+   L L         A + Y+ EP
Sbjct: 109 GAAPSDTFSKVTHAVRMLSLANAFSDEDIRDFDTRIRRFLGL------AEDAPLAYTAEP 162

Query: 123 KLDGLAVSLLYQDGLLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPPLLEVRGEV 182
           K+DGL++SL Y+ G LV+ ATRGDG  GE+++ N RT+ +IP +L G+  P +LEVRGEV
Sbjct: 163 KIDGLSLSLRYEHGTLVQAATRGDGAVGENVTANARTIDDIPHRLDGA--PEVLEVRGEV 220

Query: 183 YMSKAGFERLNATQLEAGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVTTDI 242
           YMS A F  LNA Q E GGKTFANPRNAAAGSLRQLD++IT  RPL+F  Y  G+++  +
Sbjct: 221 YMSHADFAELNARQAETGGKTFANPRNAAAGSLRQLDAEITRARPLKFFAYAWGEISAPL 280

Query: 243 ADTHIGNLKQLKAWGLPISRELKLAHGIDECLDYYRDIGERRNALPYEIDGVVFKVNSIA 302
           A+T    L + + +G  I+         ++ L  YR I  +R  L Y+IDGVV+K++ + 
Sbjct: 281 AETQTETLARFREFGFTINPLTVRCETPEDMLAQYRAIEAQRATLGYDIDGVVYKLDDLD 340

Query: 303 SQRELGFRAREPRWAIAHKFPASEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVAN 362
            QR LGFR+  PRWAIAHKFPA    T L  ++ QVGRTGA++PVARL PV V GV V+N
Sbjct: 341 LQRRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLAPVTVGGVVVSN 400

Query: 363 ATLHNMDEV---------ARLG--LMIGDTVIIRRAGDVIPQVVQVITERRPEHARPVAI 411
           ATLHN D +          R G  + +GD V + RAGDVIP++  V   RRPE A P   
Sbjct: 401 ATLHNEDYIQGRDNTGAPIRWGTDIRVGDWVQVYRAGDVIPKIRDVDLSRRPEGAAPFDF 460

Query: 412 PQQCPVCGSHVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIE 471
           P  CP CGS   R                AV RC G L C AQ  + + HFVSR A+DI+
Sbjct: 461 PTTCPECGSDAPRE------------PGDAVRRCSGGLICPAQAVEKLKHFVSRGALDID 508

Query: 472 GLGEKSVEQLVDEGLVGSPADLYALT------FEQVVDLEGFAELSSKNLLAAIVDSKKP 525
           GLG K VEQ   +G +  PAD++ L        +Q+ + EG+ + S++NL  AI  ++  
Sbjct: 509 GLGAKQVEQFYRDGWIAEPADIFTLRARFGQGLQQLKNREGWGDKSAENLFRAIDTARTA 568

Query: 526 SLARFIYALGIPDVGEETAKVLARSLGSLERVQAAL 561
             A+ ++ LGI  +GE  + +LA    ++E + AA+
Sbjct: 569 PFAKVLFGLGIRHIGESASSLLANHYLTMEALLAAV 604



 Score = 85.9 bits (211), Expect = 7e-21
 Identities = 65/165 (39%), Positives = 89/165 (53%), Gaps = 22/165 (13%)

Query: 625 LDIPSVGPGGAQKLADKFGSLEAVMNA----------DWLDMRQALPEKQANAVREFFAN 674
           L I  +G   +  LA+ + ++EA++ A           W D+         + V E  A 
Sbjct: 577 LGIRHIGESASSLLANHYLTMEALLAAVDAAVDETSDAWADLLNI------DGVGEVMAR 630

Query: 675 A---SNRQQAEAAE--RQLRDFGMHWQSEKKVVEGLPEAGHTWVLTGSLELMSRDVAKDK 729
           A   +  Q+AE A   R L        +  +V +  P AG T V TG+LE MSR  AK  
Sbjct: 631 ALVTTLTQEAERASVNRLLAQIDPAPATPPQVGDS-PVAGKTLVFTGTLETMSRAEAKAT 689

Query: 730 LESLGAKVAGSVSVKTHCVVAGPGAGSKLTKANELGLKVLDEEAF 774
            E+LGAKVAGSVS KT  ++AGPGAGSK TKA  LG++V+DE+A+
Sbjct: 690 AEALGAKVAGSVSAKTDLLIAGPGAGSKATKAEALGIEVIDEDAW 734