Pairwise Alignments

Query, 785 a.a., DNA ligase (EC 6.5.1.2) from Pseudomonas fluorescens FW300-N2E2

Subject, 691 a.a., DNA ligase, NAD-dependent (RefSeq) from Shewanella sp. ANA-3

 Score =  619 bits (1597), Expect = 0.0
 Identities = 330/596 (55%), Positives = 413/596 (69%), Gaps = 26/596 (4%)

Query: 8   IQQLRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPELVTSDSPTQRVGSMAL 67
           +Q L   L++HN RY+V D PSI D+EYDRL   LK LE ++P+ V +DSPTQRVG MAL
Sbjct: 29  MQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADSPTQRVGGMAL 88

Query: 68  SAFSQVRHEIPMLSLGNAFDEATMREFDRRVTEGLDLPMGDLLGGGAAVEYSCEPKLDGL 127
           + F Q+ H  PMLSL NAFDEA    F +RV++ +             V + CEPKLDGL
Sbjct: 89  AKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDRV-----------GEVSFCCEPKLDGL 137

Query: 128 AVSLLYQDGLLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPPLLEVRGEVYMSKA 187
           AVS+LY++G+L R ATRGDGT GEDI+ NV+T+++IPLKL+G  +P L+EVRGE +M KA
Sbjct: 138 AVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEAFMPKA 197

Query: 188 GFERLNATQLEAGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQV---TTDIAD 244
            FE LN        K F NPRNAAAGSLRQLDSKITA+R L F  Y +G V   + ++A 
Sbjct: 198 AFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTSHELAK 257

Query: 245 THIGNLKQLKAWGLPISRELKLAHGIDECLDYYRDIGERRNALPYEIDGVVFKVNSIASQ 304
           TH   L+QLK+WGLP+S E+K+   + +   YY+DI  RR  LP+EIDGVV KVN IA Q
Sbjct: 258 THYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVMKVNDIAQQ 317

Query: 305 RELGFRAREPRWAIAHKFPASEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVANAT 364
           + LGF A+ PRWAIA+KFPA EE+T L  V+FQVGRTGAVTPVARLKPV V GVTV+NAT
Sbjct: 318 QTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNAT 377

Query: 365 LHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVITERRPEHARPVAIPQQCPVCGSHVER 424
           LHN DE+ARLG+M+GDTVIIRRAGDVIPQ+V ++ ERRPE A+ +A PQ CPVCGS VER
Sbjct: 378 LHNADEIARLGVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKAIAFPQHCPVCGSLVER 437

Query: 425 TQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQLVDE 484
                       +   AV RC G L C AQ K+AI HF SR+A+DI+G+G+K VEQL+D+
Sbjct: 438 ------------LEGEAVARCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKIVEQLIDK 485

Query: 485 GLVGSPADLYALTFEQVVDLEGFAELSSKNLLAAIVDSKKPSLARFIYALGIPDVGEETA 544
            LV SPADL+ LT   +  L+     S+ NL  AI  +K  +L RF+YALGI +VGE TA
Sbjct: 486 ELVQSPADLFKLTASMMTMLDRMGIKSATNLALAIEAAKTTTLPRFLYALGIREVGETTA 545

Query: 545 KVLARSLGSLERVQAALPQVLTYLPDVGLEVAHEIHSFFEDPHNRQVIKDLLRHGL 600
             LA   GSLE ++ A  + L  + D+G  VA  +  FF  PHN +VI  L+  G+
Sbjct: 546 ANLATHFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFFAQPHNLEVIDALIAAGV 601



 Score =  114 bits (284), Expect = 2e-29
 Identities = 78/186 (41%), Positives = 104/186 (55%), Gaps = 7/186 (3%)

Query: 597 RHGLEIQDQGELGAEFSASTTLGGFLDKLDIPSVGPGGAQKLADKFGSLEA--VMNADWL 654
           R G++      L  E + +TTL  FL  L I  VG   A  LA  FGSLEA  V   + L
Sbjct: 507 RMGIKSATNLALAIEAAKTTTLPRFLYALGIREVGETTAANLATHFGSLEALRVATIEQL 566

Query: 655 DMRQALPEKQANAVREFFANASNRQQAEAAERQLRDFGMHWQS-EKKVVEGLPEAGHTWV 713
              + + E  A  V  FFA   N +  +A    L   G++W +      +  P  G TWV
Sbjct: 567 IQVEDIGEVVAQHVAHFFAQPHNLEVIDA----LIAAGVNWPAIAAPSADEQPLKGQTWV 622

Query: 714 LTGSLELMSRDVAKDKLESLGAKVAGSVSVKTHCVVAGPGAGSKLTKANELGLKVLDEEA 773
           LTG+L  ++R+ AK +L++LGAKVAGSVS  T C+VAG  AGSKL KA ELG+KV+ E+ 
Sbjct: 623 LTGTLNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDE 682

Query: 774 FVAFLS 779
            +A L+
Sbjct: 683 LLALLA 688