Pairwise Alignments

Query, 471 a.a., Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation from Pseudomonas fluorescens FW300-N2E2

Subject, 346 a.a., hypothetical ferredoxin (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  358 bits (918), Expect = e-103
 Identities = 169/324 (52%), Positives = 221/324 (68%), Gaps = 9/324 (2%)

Query: 5   IPVHDVTPPAKDANKSVDLYASREKIYTRAFTGLFRNLRMAGGALLFLLYFGTVWLNWGG 64
           IPV +++   K A KS        +I+ R   G F+ LR A  +LL LL+F   ++++ G
Sbjct: 21  IPVKNLSTGDKPAQKSSG------QIHFREQKGYFQRLRTAMNSLLILLFFALPFISFDG 74

Query: 65  HQAVWWNLPERKFFIFGATFWPQDFILLSGMLIIAAFGLFFITVYAGRVWCGYTCPQSVW 124
            QA+  ++ +++FF F  T WPQDF LL+ + I AAFGLFFITV+ GRVWCGY CPQ+ W
Sbjct: 75  RQAILLDVQQQQFFFFNLTLWPQDFTLLAWVFIAAAFGLFFITVFWGRVWCGYLCPQTAW 134

Query: 125 TWIFMWCEKVTEGDRNQRIKLDKAPMGANKFLRKLAKHSLWLLIGFVTGMTFVGYFTPIR 184
           T++F+W E   EG+ N+R  LDKAP  ANK  ++  KH+LW L   +TG  F+ YF P R
Sbjct: 135 TFMFVWLESRIEGNSNKRKLLDKAPWSANKLGKRSLKHTLWGLAALITGCGFISYFIPAR 194

Query: 185 ELVFEFFTGQADGWSYFWVGFFTLATYGNAGWLREQVCIYMCPYARFQSVMFDKDTLIVS 244
           EL  + FTG A  WS  WV FF + TY NAGW+REQ+C++ CPYARFQ+VMFD +T  V+
Sbjct: 195 ELYSDIFTGNAGFWSTCWVWFFAICTYLNAGWMREQMCLHCCPYARFQAVMFDANTKTVT 254

Query: 245 YDPRRGESRGPRKKGVDYKALGLGDCIDCTMCVQVCPTGIDIRDGLQIECIGCAACIDAC 304
           YD  RGE+RGPRK+    +   LGDC+DC +CV+VCPTGIDIRDGLQ ECI C AC+DAC
Sbjct: 255 YDAARGEARGPRKR---KQKTQLGDCVDCNLCVEVCPTGIDIRDGLQYECINCGACVDAC 311

Query: 305 DNIMDKMDYPRGLISYTTEHNLSG 328
           +  M K DY + LISY +E+ L G
Sbjct: 312 NETMQKFDYKQNLISYVSENELKG 335