Pairwise Alignments

Query, 590 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas fluorescens FW300-N2E2

Subject, 604 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq) from Shewanella loihica PV-4

 Score =  313 bits (801), Expect = 2e-89
 Identities = 210/551 (38%), Positives = 310/551 (56%), Gaps = 22/551 (3%)

Query: 36  GITLSMGQGIRLLVDQGFMTRSPHLLNQSIGLFMVLVVGLAIGTFARFYLVSWIGERVVA 95
           G+ L MG G     D   +  +P ++   IGLF +   GLA   F   Y +S+I  R++ 
Sbjct: 69  GVDLGMGGGFNS--DSDVLKTAPFVV---IGLFTLR--GLA--NFLSTYGISYISARMIM 119

Query: 96  DIRRQVFNHLVYLHPGFYENNRSSEIQSRLTADTTLLQSVIGSSLSLFLRNALMVVGGIV 155
           D+R+QVF H + L   + +   S  + SR+T DT  +    GS+L   +R+ + V+G + 
Sbjct: 120 DMRQQVFEHYLRLPVSYIDAESSGNLISRVTFDTEQIARASGSALITIVRDGITVIGMLG 179

Query: 156 LLFITNPKLTSIVVIALPLVLAPILVFGRRVRSLSRQSQDRIADVGSYVSETLGQIKTVQ 215
           ++F  + KL+  ++I  PL+   I V  R+ R +S+Q Q  +  V S   + +   K V 
Sbjct: 180 VMFYNSWKLSLCILIVGPLIGLVIAVVSRKFRKVSKQIQTAMGGVTSVTEQMIKGHKNVL 239

Query: 216 AYNHQVQDEQRFS-VTVEQAFDTARKRIAQRAWLITLVIVLVLG--AVGVMLWVGGMDVI 272
            +  Q  + QRF+ V  +    T +  +AQ    I+  +V+V+G  A+  +L+   ++ +
Sbjct: 240 VFGGQQAESQRFAKVNDDNRSRTMKLALAQA---ISQPLVMVIGSLALAFVLYASSLESM 296

Query: 273 AGRISGGELAAFVFYSLIVGSAFGTLSEVIGELQRAAGAAERIAELLRSQNIIQPPASGL 332
              ++ G  A  +   L +     +L+ V  E QR   A   I  +L +   +    +G 
Sbjct: 297 RADLTAGTFATILAAMLAMLQPIKSLTRVNAEFQRGIAACSTIFAVLDTPAEVD---NGT 353

Query: 333 VTLPERVRGDLRLEGVRFSYPSRPDSYAVDGLDLTIKAGETLALVGPSGAGKSTVYDLLL 392
               +RV G L  + V F Y ++ +  A+  +D  +  GETLALVG SG+GKST+  L+ 
Sbjct: 354 FET-KRVEGRLSFDKVNFRYNNQ-EGLALKEVDFQVNPGETLALVGRSGSGKSTIASLIT 411

Query: 393 RFYDPVQ-GQILIDDVPLTRLDPLDLRRHFALVSQNPALFFGTVEENIRYGNPG-ATSEQ 450
           RFY  +  G I +DDV L       LRR  ALVSQ   L   T+  NI Y  PG  T EQ
Sbjct: 412 RFYSDLDSGDIRLDDVSLRDYKLAALRRQVALVSQQVTLINDTIAANIAYAYPGEVTEEQ 471

Query: 451 VREAAQIAHAHDFIEKMPGGYQTHLGDGGQGLSGGQRQRLAIARALLVDAPILLLDEATS 510
           + +AA++A+A +FI  MP G  T +G+ G  LSGGQRQR+AIARA+L DAPIL+LDEATS
Sbjct: 472 IIDAAKLANAWEFICNMPEGIYTQVGENGVMLSGGQRQRIAIARAILRDAPILILDEATS 531

Query: 511 ALDAQSEHLIQQALPNLMKNRTTLVIAHRLATVKNADRIAVMDQGKVVAVGTHQELVASN 570
           ALD +SE  IQ  L NL +NRT++VIAHRL+TV+NA++I V+DQGKVV  GTH EL+A  
Sbjct: 532 ALDTESEKAIQTGLDNLRQNRTSIVIAHRLSTVENANQILVVDQGKVVERGTHSELLAKQ 591

Query: 571 ALYARLAALQF 581
            +Y  L  +QF
Sbjct: 592 GIYYNLYQMQF 602