Pairwise Alignments

Query, 590 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas fluorescens FW300-N2E2

Subject, 595 a.a., ABC transporter, ATP-binding/permease protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  556 bits (1434), Expect = e-163
 Identities = 289/565 (51%), Positives = 400/565 (70%), Gaps = 2/565 (0%)

Query: 16  FIAPYRKQVAGALLALIVTAGITLSMGQGIRLLVDQGFMTRSPHLLNQSIGLFMVLVVGL 75
           F+ PYR +V  A++ L++ +   LS+GQG+RL+VD+GF+  +   LN+ I   +V+    
Sbjct: 22  FLKPYRPRVVAAIVFLLIGSLAWLSLGQGVRLMVDEGFIKDNAQRLNEIILFVLVITAVS 81

Query: 76  AIGTFARFYLVSWIGERVVADIRRQVFNHLVYLHPGFYENNRSSEIQSRLTADTTLLQSV 135
               F RFYL++W+GERV ADIR  V+N L+ L P FY   R+ E+ SR TAD+TLLQ+V
Sbjct: 82  GTAVFCRFYLMTWLGERVSADIRLAVYNQLLKLSPAFYAKVRTGEVISRFTADSTLLQTV 141

Query: 136 IGSSLSLFLRNALMVVGGIVLLFITNPKLTSIVVIALPLVLAPILVFGRRVRSLSRQSQD 195
           +GSSLS+ LR+ + V+GG+ ++ IT+ K+T +V++A+PLVL P+  FGR+VR+L+R+SQD
Sbjct: 142 VGSSLSMALRSGVTVIGGLAMMGITSVKMTLLVLLAVPLVLGPVSFFGRKVRTLARESQD 201

Query: 196 RIADVGSYVSETLGQIKTVQAYNHQVQDEQRFSVTVEQAFDTARKRIAQRAWLITLVIVL 255
           R+AD+G+YV ETL +I TVQAY H+ +D   F+  VE     A  RI  RA LI+ V+ L
Sbjct: 202 RVADLGAYVDETLHEIHTVQAYGHEDKDRSLFNGRVEDVMTAASGRIRYRALLISSVMFL 261

Query: 256 VLGAVGVMLWVGGMDVIAGRISGGELAAFVFYSLIVGSAFGTLSEVIGELQRAAGAAERI 315
            + A+ ++ WVG  DV++G+++GGEL+AF+FY+++V  A  T+SEV+GE+QRA+GAAER+
Sbjct: 262 SIAAIALVTWVGAHDVMSGKMTGGELSAFMFYAVMVAGAVATISEVVGEIQRASGAAERL 321

Query: 316 AELLRSQNIIQPPASGLVTLPERVRGDLRLEGVRFSYPSRPDSYAVDGLDLTIKAGETLA 375
            EL  ++  I  P     TLP +VRG+L+L  + F YP +      D L+L I AGE +A
Sbjct: 322 IELAETEVDIPAPLVP-KTLPTKVRGELQLHQLNFHYPEQTQLVLSD-LNLVINAGERVA 379

Query: 376 LVGPSGAGKSTVYDLLLRFYDPVQGQILIDDVPLTRLDPLDLRRHFALVSQNPALFFGTV 435
           LVGPSGAGKST++ LL RFY P  G IL+D + +  L P DLR  FALV Q+  +F  +V
Sbjct: 380 LVGPSGAGKSTLFQLLQRFYVPSSGSILLDGIDIAALSPQDLRAQFALVPQDSVIFATSV 439

Query: 436 EENIRYGNPGATSEQVREAAQIAHAHDFIEKMPGGYQTHLGDGGQGLSGGQRQRLAIARA 495
            EN+RYG   A+ ++V +A   A AH+FI +   GYQT+LG+ G  LSGGQ+QR+AIARA
Sbjct: 440 LENVRYGRVDASEQEVIDACIAARAHEFISEFSEGYQTYLGERGVRLSGGQKQRIAIARA 499

Query: 496 LLVDAPILLLDEATSALDAQSEHLIQQALPNLMKNRTTLVIAHRLATVKNADRIAVMDQG 555
           +L D PILLLDEATSALDA SE  ++QAL  LM  +TTL+IAHRLATV NADRI V D+G
Sbjct: 500 ILADRPILLLDEATSALDALSEQKVKQALDELMAGKTTLIIAHRLATVINADRIIVFDKG 559

Query: 556 KVVAVGTHQELVASNALYARLAALQ 580
           ++VA G HQ+L+ +NALY   A LQ
Sbjct: 560 RIVASGKHQDLIKTNALYREFATLQ 584