Pairwise Alignments

Query, 590 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas fluorescens FW300-N2E2

Subject, 600 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq) from Shewanella sp. ANA-3

 Score =  331 bits (848), Expect = 6e-95
 Identities = 201/547 (36%), Positives = 317/547 (57%), Gaps = 14/547 (2%)

Query: 40  SMGQGIRLLVDQGFMTRSPHLLNQSIGLFMVLVVGLAIGTFARF---YLVSWIGERVVAD 96
           ++  GI L   QGF   +  LL   I    V+++  ++  FA F   Y +S++  R++ D
Sbjct: 61  AISNGIALPTSQGFHADNQVLLMAPI----VVILMFSLRGFANFVSTYGISYMSARLIMD 116

Query: 97  IRRQVFNHLVYLHPGFYENNRSSEIQSRLTADTTLLQSVIGSSLSLFLRNALMVVGGIVL 156
           +R+QVF H + L   + +   +  + S++T DT  +    GS+L   +R+ + V+G + L
Sbjct: 117 MRQQVFEHYLSLPVSYMDKENTGNLISKVTFDTEQIARASGSALISIVRDGVTVIGMLAL 176

Query: 157 LFITNPKLTSIVVIALPLVLAPILVFGRRVRSLSRQSQDRIADVGSYVSETLGQIKTVQA 216
           +F  + KL+  +++  P++   I +  RR R +S+Q Q  + DV +   + +   K V A
Sbjct: 177 MFYNSWKLSLCILVIGPIMGLVITIVSRRFRKVSKQIQTAMGDVSAATEQMIKGHKNVLA 236

Query: 217 YNHQVQDEQRFSVTVEQAFDTARKRIAQRAWLITLVIVLVLGAVGVMLWVGGMDVIAGRI 276
           +  Q  +  RF+   ++      K    +A    L++V+   A+  +L+   +D +   +
Sbjct: 237 FGGQETETARFAKVNDRNRHQNMKLAVAQAISQPLIMVIGSFALAFVLYAASLDSMKADL 296

Query: 277 SGGELAAFVFYSLIVGSAFGTLSEVIGELQRAAGAAERIAELLRSQNIIQPPASGLVTLP 336
           + G  A  +   + +      L+ V  E QR   A   + ELL   + +    +G  T+ 
Sbjct: 297 TAGTFATILGAMMAMLQPIKNLTRVNAEFQRGIAACTTVFELL---DTLPESDTGTYTV- 352

Query: 337 ERVRGDLRLEGVRFSYPSRPDSYAVDGLDLTIKAGETLALVGPSGAGKSTVYDLLLRFYD 396
           +R +G+LR + V FSY  + +  A+D +D  +  G+TLALVG SG+GKST+  L+ RFY 
Sbjct: 353 KRAKGNLRFDNVSFSYDGQ-ERRALDNIDFEVTQGQTLALVGRSGSGKSTIASLVTRFYT 411

Query: 397 PVQ-GQILIDDVPLTRLDPLDLRRHFALVSQNPALFFGTVEENIRYGNPG-ATSEQVREA 454
            ++ G IL+DDV +       LR   ALVSQ   LF  T+  NI Y  PG AT EQ+ +A
Sbjct: 412 GLESGDILLDDVSIYDYSLKSLRNQVALVSQQVTLFNDTIANNIAYAYPGEATREQIIQA 471

Query: 455 AQIAHAHDFIEKMPGGYQTHLGDGGQGLSGGQRQRLAIARALLVDAPILLLDEATSALDA 514
           A +AHA +FIE++P G  T +G+ G  LSGGQRQR+AIARA+L DAP+L+LDEATSALD 
Sbjct: 472 ATLAHAMEFIEQLPEGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDT 531

Query: 515 QSEHLIQQALPNLMKNRTTLVIAHRLATVKNADRIAVMDQGKVVAVGTHQELVASNALYA 574
           +SE  IQQ L NL +NRT++VIAHRL+T+++AD+I V+DQG++V  GTH+ L+    +YA
Sbjct: 532 ESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELGGMYA 591

Query: 575 RLAALQF 581
           +L  +QF
Sbjct: 592 KLYQMQF 598