Pairwise Alignments

Query, 870 a.a., DNA topoisomerase I (EC 5.99.1.2) from Pseudomonas fluorescens FW300-N2E2

Subject, 898 a.a., DNA topoisomerase I (RefSeq) from Shewanella loihica PV-4

 Score = 1199 bits (3101), Expect = 0.0
 Identities = 590/875 (67%), Positives = 703/875 (80%), Gaps = 8/875 (0%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASAS---KEPAAKRGKAA 57
           MGKSLVIVESPAKAKTINKYLG  Y+VKSS+GHIRDLPTS S+ AS   K PA  R  + 
Sbjct: 17  MGKSLVIVESPAKAKTINKYLGKDYIVKSSVGHIRDLPTSSSSDASSSTKSPAEVRKMST 76

Query: 58  AGEAPALSPKDKARKQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKDADTIYLAT 117
             E  A    DKA+K LV+RMGVDPE GWKAKY+ LPGKEKV++EL+ LA++AD I+LAT
Sbjct: 77  --EEKAKYKADKAKKALVARMGVDPERGWKAKYQTLPGKEKVVKELQSLAENADHIFLAT 134

Query: 118 DLDREGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRF 177
           DLDREGEAIAWHL+E IGGD  RY+RVVFNEITK AIQEAFS P +L+ + VNAQQARRF
Sbjct: 135 DLDREGEAIAWHLQEVIGGDPERYQRVVFNEITKSAIQEAFSHPSQLNTNMVNAQQARRF 194

Query: 178 LDRVVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAK 237
           LDRVVG+MVSPLLW K+ARGLSAGRVQSVA +LVVERE EI+AF+PEE+W++HA+L T  
Sbjct: 195 LDRVVGFMVSPLLWKKVARGLSAGRVQSVATRLVVEREGEIKAFVPEEFWDIHAELTTLG 254

Query: 238 GATVRFDVAREKGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQ 297
              ++  VA+ KG+ F P+NEAQAM A+  LK S Y +  RE K TSSKPSAPFITSTLQ
Sbjct: 255 NEGLKMQVAKFKGDNFNPVNEAQAMVAVNALKDSKYQVSSREVKATSSKPSAPFITSTLQ 314

Query: 298 QAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVAMARTYIESEFGKKYLPD 357
           QAAS RLGFGVKKTMMMAQRLYEAG+ITYMRTDSTNLS +A+   R  I  E+G KYLPD
Sbjct: 315 QAASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDSVRDMIGKEYGDKYLPD 374

Query: 358 TPNVYSSKEGAQEAHEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLS 417
            P  Y SKEGAQEAHEAIRPSD N   + LS MERDA+RLYELIWRQF+ACQM PA+Y +
Sbjct: 375 APIRYGSKEGAQEAHEAIRPSDVNVSATSLSDMERDAQRLYELIWRQFVACQMTPAKYDA 434

Query: 418 TTVSVGAGDFELRAKGRILKFDGYTRVMPQITKPGDDD-VLPDMAQGDVMKLIKLDPTQH 476
           T ++V AGD+EL+A GR LKFDG+TRV   + K  ++D  LP +A+GDV+ L +L P QH
Sbjct: 435 TRLTVTAGDYELKASGRTLKFDGWTRVQTALKKKNEEDNTLPMVAEGDVLALEELLPKQH 494

Query: 477 FTKPPARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTER 536
           FTKPPARYSEASLVKE+EKRGIGRPSTYA IISTIQDRGYV + NRRFY+EKMG+IV+E 
Sbjct: 495 FTKPPARYSEASLVKELEKRGIGRPSTYATIISTIQDRGYVKVENRRFYAEKMGEIVSES 554

Query: 537 LSESFSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESP--DSGMRA 594
           L  SF  LM Y FTAGME+ LD+VAQG+ +WK VLD FY     +LE AE P  + GMR 
Sbjct: 555 LIGSFEELMSYDFTAGMEQTLDNVAQGQLEWKKVLDNFYKGLTAQLEKAELPPEEGGMRP 614

Query: 595 NQPVMTDIPCLTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGE 654
           N+ V+TDI C TCGRPM IRT +TGVFLGCSGY+LPPKERCK T+NL PG+E  +++  +
Sbjct: 615 NEMVLTDIACPTCGRPMGIRTGTTGVFLGCSGYALPPKERCKTTMNLTPGEEAVSENSED 674

Query: 655 SESLVLRGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGTYRIKGYEGPSLE 714
           +E+  LR KHRC +C TAMD+YL+DEKRKLH+CGNNP C GYE+E+G ++IKGYEGP +E
Sbjct: 675 AETDALRAKHRCDVCGTAMDSYLIDEKRKLHVCGNNPICGGYEVEQGQFKIKGYEGPIIE 734

Query: 715 CDKCGSEMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTY 774
           CD+CG++M+LK GRFGK+FGCTN  CKNTRKLLK+G+ APPK DP+ +PELKC K +  +
Sbjct: 735 CDRCGNDMELKNGRFGKYFGCTNSECKNTRKLLKNGEVAPPKEDPIHLPELKCTKSDGYF 794

Query: 775 ILRDGASGLFLAASQFPKNRETRAPLVMEIVPHKDEIDPKYHFLCEAPQKDPDGRPAVIR 834
           +LRDGA+G+FLAAS FPK+RETRAPLV E+V +++ + PKY +L +AP  D DG  AV+R
Sbjct: 795 VLRDGAAGIFLAASTFPKSRETRAPLVEELVKYRELLWPKYQYLADAPVADEDGNKAVVR 854

Query: 835 YSRKTKEQYVQTEVDGKPTGWKAYYDGGKWTVEDK 869
           +SRKTKEQYV TE+DGK TGW A + GGKW  E K
Sbjct: 855 FSRKTKEQYVATEIDGKATGWTAKFVGGKWVSEAK 889