Pairwise Alignments

Query, 1149 a.a., Transcription-repair coupling factor from Pseudomonas fluorescens FW300-N2E2

Subject, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 1246 bits (3224), Expect = 0.0
 Identities = 646/1146 (56%), Positives = 837/1146 (73%), Gaps = 13/1146 (1%)

Query: 5    RLPLLPAAAGKQHWGNLPGA-ALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAP 63
            RLP  PA  G+     LPG  A +L +AE   +    TL++T+D+ +A  LE EL +   
Sbjct: 8    RLPKTPAK-GRVSAVRLPGGVARALTLAEMTCSYAGTTLIVTSDTPTALVLEAELGYLLK 66

Query: 64   D--LPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPTQ 121
               + +  FPD ETLPYD FSPHQD+ISQR+ +L  L      +++VP+TT + RL P  
Sbjct: 67   PRGIDICLFPDRETLPYDSFSPHQDLISQRLETLSNLERGKGRLVIVPLTTLMVRLPPKA 126

Query: 122  FLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYR 181
            FL  + L+L  G +  ++QMR  L  +GY  V+ VYEHGEFA+RG+++D+FP G+  P R
Sbjct: 127  FLAANVLILKKGDRYQLQQMRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGASEPLR 186

Query: 182  IDLFDDEIETLRTFDPENQRSIDKVQSIRLLPAKEFPLQKDAVTRFKARFRERFD-VDFR 240
            I+LFDDE+E++R FDPE QRS  +V SIR+LPA+EFP    A+  F+ R+R  F+ V+  
Sbjct: 187  IELFDDEVESIRHFDPETQRSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTFETVNNA 246

Query: 241  RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN 300
               ++Q +S  + PAGIE YLPLFF++T+TLFDYLP++ Q+ +   + QAAE+   ++ +
Sbjct: 247  AESVYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPEELQIITTGALHQAAEHHLGEIHS 306

Query: 301  RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPARALPDL 360
            RYE+R+VDP RPLLPP  L+   E+ FAR K +PR+     D+    G +   A  LPD+
Sbjct: 307  RYEDRQVDPLRPLLPPKTLYQTTEELFARFKLYPRI-----DLSGDEGDKTLEAAPLPDI 361

Query: 361  AIEAKATQPLAALAGFLDAFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAG 420
                K  QPL +LA +      R+ F AES GRRE LLELL +  L+PK      +F+A 
Sbjct: 362  RANHKLKQPLESLANWAQGGQ-RIAFVAESEGRREALLELLGKAGLKPKLFGHLDEFLAS 420

Query: 421  KDRLAITIAPLNDG--LVLDDPALALVAESPLFGQRVMQRRRREKRADAANDAVIKNLTE 478
                 + +APL  G  L +    LA+V E+ LFG+RV Q RRR+K+   + D +IKNL E
Sbjct: 421  DSPHGLVVAPLAMGCQLKMGKSQLAVVCETELFGERVSQERRRDKQRQLSQDVLIKNLAE 480

Query: 479  LREGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSD 538
            L+ G PVVH++HGVG Y GL TL+     AE+L LEYA G KLYVPV+ LHLI+R+   +
Sbjct: 481  LKVGQPVVHLEHGVGLYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVSALHLISRFAVGN 540

Query: 539  DALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYETFSAG 598
            D  APL+RLG+E+W KAKRKA E++RDVAAELLD+YARR AR G      +A+Y  F+ G
Sbjct: 541  DESAPLNRLGNESWSKAKRKAIEKIRDVAAELLDVYARREARPGDPCTLDEAEYAQFAQG 600

Query: 599  FPFEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILV 658
            FPFEETVDQ+T I+AV  DM  PK MDRLVCGDVGFGKTEVAMRAAF+AV  GKQV +LV
Sbjct: 601  FPFEETVDQETAIKAVIDDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLV 660

Query: 659  PTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQD 718
            PTTLLAQQH+ +F+DRFADWPV +EVMSRF++ KE  A ++ + EGK+DIVIGTHKLL  
Sbjct: 661  PTTLLAQQHFENFKDRFADWPVRIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNT 720

Query: 719  DVKFKSLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSII 778
            ++ F+SLGL+IIDEEHRFGVRQKE++KA+R+ VDILTLTATPIPRTLNMA+SGMRDLSII
Sbjct: 721  ELNFESLGLLIIDEEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 780

Query: 779  ATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEA 838
            ATPPA+RL+V+TFV E +K+TV+EA+LRE+LRGGQVYYLHN V+TIEK A D+ EL+PEA
Sbjct: 781  ATPPAKRLAVKTFVREYDKATVREAILREILRGGQVYYLHNQVETIEKAAQDIRELLPEA 840

Query: 839  RIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQL 898
            R+   HGQMRERELE+VMSDFYH+RFNVL+ +TIIETGIDVPSANTI+I+RAD FGLAQL
Sbjct: 841  RVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANTILIDRADHFGLAQL 900

Query: 899  HQLRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAG 958
            HQLRGRVGRSHHQAYAYL+TP  + +T DA KRLEAI   +DLGAGF+LAT DLEIRGAG
Sbjct: 901  HQLRGRVGRSHHQAYAYLMTPHPKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIRGAG 960

Query: 959  ELLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEDY 1018
            ELLGD QSG I  +GF+LYMEMLE AVK++++G++P+L Q LG   EI+LR+PAL+P+DY
Sbjct: 961  ELLGDEQSGHISKIGFSLYMEMLEGAVKALKQGKEPSLRQMLGAQCEIDLRIPALLPDDY 1020

Query: 1019 LPDVHARLILYKRIASASDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTLLKLKAEQLGIK 1078
            + DV+ RL LYKRIA    E+ + +++VE+IDRFGLLP+ T+NL+  T+ K +A +LG  
Sbjct: 1021 VNDVNMRLSLYKRIAGCDTEKAVDEMKVELIDRFGLLPDATRNLLTMTVQKHRATRLGAT 1080

Query: 1079 KVDGGPNGGRIEFEAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERAEERFNTVE 1138
            K++    GG IEF  +  VDP  +I L+  QP+ Y+ +G    +F +P E A+ER   +E
Sbjct: 1081 KIEMHGRGGSIEFGEEHRVDPGFIIGLLSSQPQVYRMDGPNKLRFTMPCETAKERLELLE 1140

Query: 1139 ALFERL 1144
             L E+L
Sbjct: 1141 LLLEQL 1146