Pairwise Alignments

Query, 1149 a.a., Transcription-repair coupling factor from Pseudomonas fluorescens FW300-N2E2

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Shewanella loihica PV-4

 Score = 1252 bits (3239), Expect = 0.0
 Identities = 648/1149 (56%), Positives = 847/1149 (73%), Gaps = 11/1149 (0%)

Query: 3    VLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFF- 61
            +L  P +      Q    L GAA ++++A+        TL++T D+ SA RLE EL +  
Sbjct: 6    ILTPPKVKGVKSPQTLSQLTGAARAISLAKLCEQYSSMTLVVTPDTPSALRLEAELGYLL 65

Query: 62   AP-DLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPT 120
            AP  +PV+ FPD ETLPYD FSPHQD++SQR+ +L R+P   H +++VP++T + +L P 
Sbjct: 66   APKSIPVMLFPDRETLPYDSFSPHQDLVSQRLETLSRIPSAGHSLVIVPMSTLMVKLPPQ 125

Query: 121  QFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY 180
             FL G+ L+L  G    +E +R++L  +GY  V+ VYEHGEFAVRG++IDLFPMG++ PY
Sbjct: 126  SFLTGNVLLLSKGDNYPLEAVRSQLVNTGYHHVEQVYEHGEFAVRGSIIDLFPMGAQSPY 185

Query: 181  RIDLFDDEIETLRTFDPENQRSIDKVQSIRLLPAKEFPLQKDAVTRFKARFRERFDVDFR 240
            RI+LFDDE+E++R FDPE QRS  +++SIRLLPAKEFP    A+  F+ R+R +F+V  +
Sbjct: 186  RIELFDDEVESIREFDPETQRSSGEIESIRLLPAKEFPTNDAAIEGFRQRYRRQFEVVVK 245

Query: 241  RCP-IFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVR 299
                I+Q +S  + PAGIE YLPLFF+ET++LFDYLP + Q+  +  +E AA++   ++ 
Sbjct: 246  EPESIYQMVSRKVMPAGIESYLPLFFDETASLFDYLPGECQLVQVGDLENAAKHHLQEIN 305

Query: 300  NRYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPARALPD 359
             RYE RRVDP RPLLPP +L+L  E  F   K  PR +    +  TG   E     ALP+
Sbjct: 306  QRYENRRVDPLRPLLPPKDLYLLTEQVFEAFKQLPRFLIKGNEA-TGTCVEA-QLEALPN 363

Query: 360  LAIEAKATQPLAALAGFLDAFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVA 419
            +A   K  QPL +L  F +     +LF  ES GRRE LLELL +++++P  +D    F  
Sbjct: 364  IAANHKLKQPLISLKEFANGGTP-ILFCVESEGRREALLELLAKIEIKPALLDHLDSFSH 422

Query: 420  GKDRLAITIAPLNDGLVLDD---PALALVAESPLFGQRVMQRRRREKRADAANDAVIKNL 476
                  + +APL+ G +      P+ ALV E+ LFGQR+ Q+RRR+K+   + DA+IK+L
Sbjct: 423  KPQPFGLIVAPLSQGAIYHPKKGPSWALVCETELFGQRIAQQRRRDKQRQVSQDALIKDL 482

Query: 477  TELREGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYT- 535
             EL+ G P+VH+DHGV  Y GL TL+     AE+L LEYA G KLYVPVA+L+LI++Y+ 
Sbjct: 483  AELKVGQPIVHLDHGVALYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVASLNLISQYSV 542

Query: 536  GSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYETF 595
            G+DDA   L++LG+E+W KAKRKA E++RDVAAELLD+YARR AR G A    + +Y  F
Sbjct: 543  GADDA-PQLNKLGNESWTKAKRKAIEKIRDVAAELLDVYARRQARPGEACRLDREEYAQF 601

Query: 596  SAGFPFEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVA 655
            +  FPFEETVDQ+T I+AV  DM +P  MDRLVCGDVGFGKTEVAMRAAF+AV+ GKQVA
Sbjct: 602  AGSFPFEETVDQETAIDAVLTDMCSPISMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVA 661

Query: 656  ILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKL 715
            ILVPTTLLAQQHY +F+DRFADWP+ +EVMSRFK+ KE  A +  L  G++DIVIGTHKL
Sbjct: 662  ILVPTTLLAQQHYENFKDRFADWPIKIEVMSRFKTAKEQQAVLKQLELGQVDIVIGTHKL 721

Query: 716  LQDDVKFKSLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDL 775
            LQ + KF++LGL+IIDEEHRFGVRQKE++KALR+ +DILTLTATPIPRTLNMA+SGMRDL
Sbjct: 722  LQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANIDILTLTATPIPRTLNMAMSGMRDL 781

Query: 776  SIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELV 835
            SIIATPPA+RL+V+TFV E + +TV+EALLRE+LRGGQVY+LHN V+TIEK A ++  L+
Sbjct: 782  SIIATPPAKRLAVKTFVREYDDATVREALLREILRGGQVYFLHNSVETIEKRAREIEALL 841

Query: 836  PEARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGL 895
            PEAR+   HGQMRER+LE+VMSDFYH+++NVL+ +TIIETGIDVPSANTIIIERAD FGL
Sbjct: 842  PEARVVTAHGQMRERDLEKVMSDFYHQKYNVLVCTTIIETGIDVPSANTIIIERADNFGL 901

Query: 896  AQLHQLRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIR 955
            AQLHQLRGRVGRSHHQAYAYL+ P  +++T DA KRLEAI   +DLGAGF+LAT DLEIR
Sbjct: 902  AQLHQLRGRVGRSHHQAYAYLMMPHPKRMTKDAIKRLEAIGALEDLGAGFMLATQDLEIR 961

Query: 956  GAGELLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIP 1015
            GAGELLGD QSG I  +GFTLYMEMLE AVKS+++G++P+LDQ L G  EI+LR+PAL+P
Sbjct: 962  GAGELLGDEQSGHISKIGFTLYMEMLEDAVKSLKEGKEPSLDQMLRGQCEIDLRIPALLP 1021

Query: 1016 EDYLPDVHARLILYKRIASASDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTLLKLKAEQL 1075
            EDY+ DV+ RL LYKRIA+ +  + L +L+VE+IDRFGLLP+ TKNL+  +L K +A  L
Sbjct: 1022 EDYVGDVNIRLSLYKRIANCATAQALDELKVELIDRFGLLPQATKNLMEVSLFKHQATAL 1081

Query: 1076 GIKKVDGGPNGGRIEFEAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERAEERFN 1135
            GI K++    GG +EF     VDP  +I L+Q QP+ Y+ +G +  KF++P E  ++R  
Sbjct: 1082 GIAKIEMHAKGGSLEFNNDHCVDPGFIIGLLQSQPQNYRMDGPSKLKFLMPTETDKDRLA 1141

Query: 1136 TVEALFERL 1144
             +  +  +L
Sbjct: 1142 LLSLIISQL 1150