Pairwise Alignments

Query, 1149 a.a., Transcription-repair coupling factor from Pseudomonas fluorescens FW300-N2E2

Subject, 1197 a.a., transcription-repair coupling factor (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  613 bits (1581), Expect = e-179
 Identities = 403/1121 (35%), Positives = 604/1121 (53%), Gaps = 74/1121 (6%)

Query: 23   GAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDL----PVLHFPDWETLPY 78
            G A  LA+A     A R  +++  D+          + F+P+L    P +    W+   +
Sbjct: 50   GGAARLALA--LMRAGRDVVMVVRDAAELAEARALTTLFSPELSGTDPAVTQARWDA-QW 106

Query: 79   DLFSPH------QDIISQRIASLYRLPELSHGV-LVVPITTALHRLAPTQFLLGSSLVLD 131
             +F  H      +   + R+ASLY L    H   +++ +   L +L P        L L 
Sbjct: 107  IVFPQHPAGTRGRGAWAARMASLYALSRREHPRGIIISVDNLLPKLPPVDIFEHHELRLA 166

Query: 132  IGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDDEIET 191
             G+ +  E +  +    G+     V   GE A RG ++D+FP G + P R++ F D +E 
Sbjct: 167  RGEDMSPELVLDQAIDWGFERAQMVSRPGEAARRGDILDIFPPGYEKPLRLEFFGDTLED 226

Query: 192  LRTFDPENQRSIDKVQSIRLLPA------KEFPLQKDAVTRFKARFRERFDVDFRRCPIF 245
            +R FD  +QRS+  ++  RLLP       +E+   ++A  R   + R+   +D  +    
Sbjct: 227  IRLFDATSQRSLASLEEFRLLPVAPVVGCREY---REAAARRWKQLRKDGVIDGEQAAAL 283

Query: 246  QDLSSGITPAGIEYYLP-LFFEETSTLFDYLPQDTQVFSLP-------GIEQAAENFWND 297
              ++ G     +   LP  ++E  + + D+LP+D  V+ LP        +E A  N+   
Sbjct: 284  ARMAEG----EVTGLLPGAWYENATWMEDWLPRDA-VWLLPDRADLSTALEAARTNWEAL 338

Query: 298  VRNRYEERRVDPSRPLLPPAELFLPVEDCFARLKSWP-RVVASQQDVETGVGRER--FPA 354
            +  +Y+E R+   RPL+        + D      +W  R VA  + +  GV R     P 
Sbjct: 339  LDRQYDEHRLRQPRPLV--------LRDADEAQAAWRGRSVAHFERLVMGVERTGVDLPE 390

Query: 355  RAL----------PDLAI-EAKATQPLAALAGFLDAFPGRVLFTAESAGRREVLLELLER 403
            R L          P + + E +  Q L        +   +V+ +  S   R   L+L E+
Sbjct: 391  RRLHAFRDLFAATPSVPVDEDRPWQRLVTALRQWTSERRQVVLSFASDRSRRKFLKLAEQ 450

Query: 404  LKLRPKTVDSWPDFVAGKDRLAITIAPLNDGLVLDDPALALVAESPLFGQRVMQRRRREK 463
              +RP    S  D       L   +AP   G+ L    + ++ E  L       +  R+ 
Sbjct: 451  DGVRPNLRYSPAD-----RGLYALVAPFRAGIDLAWDNVLVIGEDVL-----QPKADRQP 500

Query: 464  RADAANDAVIKNLTELREGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYV 523
            R        +    +L  G  +VH D+GVGR+ GL  +++   A +FL LEYA   +LY+
Sbjct: 501  RVPTGAFLGLDKYDDLSPGDLLVHRDYGVGRFGGLHRMDLGGVANDFLLLEYAGEDRLYL 560

Query: 524  PVANLHLIARYTGSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGY 583
            PV  L LI R+ G DD++  L +LG   W+  K KA + +  +AA+L+ +YA R   +GY
Sbjct: 561  PVDRLSLIQRFKGGDDSVPSLDKLGGSGWRACKDKARKAIEKIAADLVQMYAYRKVAKGY 620

Query: 584  AFADPKADYETFSAGFPFEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRA 643
             +      Y  F A F FEET DQ   I+ V  DM  P+PMDRLVCGDVGFGKTEVA+RA
Sbjct: 621  RYGPLGELYREFEASFGFEETPDQARAIQDVLDDMEKPEPMDRLVCGDVGFGKTEVALRA 680

Query: 644  AFIAVHGGKQVAILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAE 703
            AF A   G+QVA+L PTT+LA+QHY +FR R A +PV V ++SRF S ++    +   A 
Sbjct: 681  AFRAAAEGRQVALLCPTTVLAEQHYQTFRSRLAGFPVNVGMLSRFVSRQKQKEVLQAAAR 740

Query: 704  GKIDIVIGTHKLLQDDVKFKSLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPR 763
            G+IDI+IGTH+LL DDV+  +LGL+++DEE RFGVR KE+LK  R  VD LTLTATPIPR
Sbjct: 741  GQIDILIGTHRLLSDDVQLPNLGLLVLDEEQRFGVRHKEKLKKFRKNVDALTLTATPIPR 800

Query: 764  TLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKT 823
            TL +++SG+R+LS+I T P  R  V T ++E++++ +++ L RE+ R GQV+++HN V+ 
Sbjct: 801  TLQLSMSGIRELSVIETAPPERKPVATALIERDQNALRQILEREIAREGQVFWVHNRVQG 860

Query: 824  IEKCAADLAELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSAN 883
            +E+ A  +  LVP AR+G+ HGQM ERELE  M  F+H   +VL+ + I+E+G+D P AN
Sbjct: 861  LERVAEFVRGLVPTARVGMAHGQMGERELEDTMHKFWHGELDVLVCTAIVESGLDFPRAN 920

Query: 884  TIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGA 943
            T+I+++A  FGL QL+QLRGRVGRS  QAYA  +    +++   A +R+  I     LGA
Sbjct: 921  TLIVDQAQMFGLGQLYQLRGRVGRSDRQAYAVFVVSDAERLPEQARQRMRIILELDYLGA 980

Query: 944  GFVLATNDLEIRGAGELLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGG 1003
            GF +A  DL +RGAG +LG+ QSG +  +G  LY+EMLE  V  + KG  P         
Sbjct: 981  GFQVAMEDLRLRGAGNILGEVQSGHMTRLGLDLYLEMLEEEVARL-KGAPPRESVE---- 1035

Query: 1004 PEINLRVPALIPEDYLPDVHARLILYKRIASASDEEGLKDLQVEMIDRFGLLPEPTKNLV 1063
            PE+N+ + A IPE Y+ D   RL  YK ++SA D   L+D+++E+ DRFG  P   +N +
Sbjct: 1036 PELNIGLAAHIPETYIGDARERLKFYKALSSAPDAATLQDVEMELRDRFGPCPPELRNFL 1095

Query: 1064 RTTLLKLKAEQLGIKKVDGGPNGGRIEF-EAQTPVDPLVLI 1103
               +LK     L + + D  P   R+ + E QT + P  L+
Sbjct: 1096 AVLVLKRFLATLQVVRADIHPERLRLVWDERQTVIAPERLV 1136