Pairwise Alignments

Query, 1149 a.a., Transcription-repair coupling factor from Pseudomonas fluorescens FW300-N2E2

Subject, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1265 bits (3273), Expect = 0.0
 Identities = 645/1151 (56%), Positives = 844/1151 (73%), Gaps = 7/1151 (0%)

Query: 1    VPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF 60
            +  L  P++      Q    + G   ++ +A      +  TL++T+D+ +A  LE EL++
Sbjct: 4    ISALTPPVVKNGTQMQTLSCIAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLELELNY 63

Query: 61   FAPD--LPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLA 118
                  + V  FPD ETLPYD FSPHQD+ISQR+ +L ++    H V++VP+TT + RL 
Sbjct: 64   LLAKTAIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITHAEHSVVIVPVTTLMMRLP 123

Query: 119  PTQFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKL 178
            P  +L  +  VL  G K  +  +R +L  +GY  V+ VYEHGEFA+RG+++D+FP G  +
Sbjct: 124  PKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNM 183

Query: 179  PYRIDLFDDEIETLRTFDPENQRSIDKVQSIRLLPAKEFPLQKDAVTRFKARFRERFDVD 238
            P RI+LFDDE+ET+R FDPE QRS   V ++RLLPAKEFP    A+  F+ R+R RF+V 
Sbjct: 184  PLRIELFDDEVETIRHFDPETQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRFEVI 243

Query: 239  FRRCP-IFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWND 297
             +    ++Q +S  + PAGIE YLPLFF+E STLFDYLP++TQ+ +L  IE++A     +
Sbjct: 244  VKEPESVYQLVSRNLMPAGIENYLPLFFDEVSTLFDYLPKNTQLVTLGDIEKSARAHLQE 303

Query: 298  VRNRYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPARAL 357
            V  RYE+RRVDP RPLL P EL+L +E+ FA  K  PR      + +T     +  ARAL
Sbjct: 304  VEIRYEDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFVAPNPDTNGVAAQIDARAL 363

Query: 358  PDLAIEAKATQPLAALAGFLDAFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDF 417
            P+++   K  QPL AL  + +  P R+LF+AES GRRE LLELL +++L+P     + +F
Sbjct: 364  PEVSANHKLKQPLIALQDYAEQAP-RMLFSAESEGRREALLELLGKIQLKPSVFSHFDEF 422

Query: 418  VAGKDRLAITIAPLNDGLVLD---DPALALVAESPLFGQRVMQRRRREKRADAANDAVIK 474
            +    RL + ++PL+ G +L      A++++ E+ LFGQR+ Q+RRREK+   +ND +IK
Sbjct: 423  IQSDARLGLIVSPLSRGCLLGLGAQTAVSIICETELFGQRISQQRRREKQRQISNDTLIK 482

Query: 475  NLTELREGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARY 534
            NL EL+ G P+VH++HGV  Y GL TL+     AE+L LEY+ G KLYVPV+NLHLI+RY
Sbjct: 483  NLAELKVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLHLISRY 542

Query: 535  TGSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYET 594
            +   D    L++LG++TW KAK KA E++RDVAAELLD+YARR AR G +      +Y  
Sbjct: 543  SVGADGETHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEINDEEYAQ 602

Query: 595  FSAGFPFEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQV 654
            F+ GFPFEETVDQ++ I AV ADM +P  MDRLVCGDVGFGKTEVAMRAAF+AV+ GKQV
Sbjct: 603  FAQGFPFEETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQV 662

Query: 655  AILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHK 714
             +LVPTTLLAQQHY +F+DRFADWPV +EVMSRF++ KE    +  L EGK+DIVIGTHK
Sbjct: 663  VVLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIGTHK 722

Query: 715  LLQDDVKFKSLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRD 774
            LLQ + KF++LGL+IIDEEHRFGVRQKE++KALR+ VDILTLTATPIPRTLNMA+SGMRD
Sbjct: 723  LLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRD 782

Query: 775  LSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAEL 834
            LSIIATPPA+RL+V+TFV E + +TV+EA+LRE+LRGGQVYYLHN+V+TIEKCA D++ L
Sbjct: 783  LSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDISTL 842

Query: 835  VPEARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFG 894
            +PEAR+ + HGQMRER+LE+VMSDFYH+RFNVL+ +TIIETGIDVPSANTIIIERAD FG
Sbjct: 843  LPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFG 902

Query: 895  LAQLHQLRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEI 954
            LAQLHQLRGRVGRSHHQAYAYL+TP  +++T DA KRLEAI   +DLGAGF+LAT DLEI
Sbjct: 903  LAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQDLEI 962

Query: 955  RGAGELLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALI 1014
            RGAGELLGD QSG I  +GF+LYMEMLE AVK++++G++P+L Q L    E+ LR+PAL+
Sbjct: 963  RGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIPALL 1022

Query: 1015 PEDYLPDVHARLILYKRIASASDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTLLKLKAEQ 1074
            PEDY+ DV+ RL LYKRIAS   EE L +L+VE+IDRFGLLP+ TKNL+  TL K +A +
Sbjct: 1023 PEDYVGDVNIRLSLYKRIASCDSEEALDELKVELIDRFGLLPDATKNLMEMTLYKHQATR 1082

Query: 1075 LGIKKVDGGPNGGRIEFEAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERAEERF 1134
            LG  K++    GG IEF     +DP  +I L+Q QP+ Y+ +G    KF++  E A++R 
Sbjct: 1083 LGATKIEVHAKGGSIEFSQDHSIDPGFIIGLLQSQPQIYRMDGPNKLKFILSAETAKDRL 1142

Query: 1135 NTVEALFERLT 1145
              V+ L E+L+
Sbjct: 1143 ALVKLLLEQLS 1153