Pairwise Alignments

Query, 1149 a.a., Transcription-repair coupling factor from Pseudomonas fluorescens FW300-N2E2

Subject, 1160 a.a., transcription-repair coupling factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  637 bits (1642), Expect = 0.0
 Identities = 407/1123 (36%), Positives = 620/1123 (55%), Gaps = 54/1123 (4%)

Query: 23   GAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPV----LHFPDWET--- 75
            G A +  +  A   A R  +++  D++        L+ F+PD       L  P WE+   
Sbjct: 25   GMATAARLGNAVLDAGRSAVMVVRDAEELALARGLLTLFSPDASAGDSPLVKPRWESRWV 84

Query: 76   -LP-YDLFSPHQDIISQRIASLYRLPE--LSHGVLVVPITTALHRLAPTQFLLGSSLVLD 131
             +P + L + ++D  + R+A+L+ L +  +  GVL+  +   L +L P        L L 
Sbjct: 85   VMPQHPLGARNRDAWASRMAALFALGQKRVPQGVLIT-VDNFLSKLPPADLFASHELTLA 143

Query: 132  IGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDDEIET 191
             G ++  E +  +    G+  V  V   GE AVRG ++D++P G + P R++ F + +E 
Sbjct: 144  CGDEMAPELVLEQAVDWGFDRVQMVSRPGEIAVRGDIVDIYPPGYERPLRLEFFGETLEE 203

Query: 192  LRTFDPENQRSIDKVQSIRLLPAKEFPLQKDAVTRFKARFRERFDVDFRRCPIFQDLSSG 251
            +R FD  NQRS+ K+  + LLP     L  +  ++  AR++  F         +  L  G
Sbjct: 204  IRLFDASNQRSLGKLDEMVLLPVSPVVLSAELRSKATARWKRLFSKGMLTEEQYAGLLRG 263

Query: 252  ITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQ------AAENFWNDVRNRYEER 305
            I   G       ++E  + + ++LP+D   + LPG ++      AA+  W  + ++  E 
Sbjct: 264  IERHGEGLMPGAYYEAPTVVEEWLPRDA-AWILPGRKELVDAVEAAQQNWEALFDKQAEE 322

Query: 306  --RVDPSRPLLPPAELFLPVEDCFARLKSW---PRVVASQQDVETGVGRERFPARALPDL 360
                 P   +L  A    PV   +    S    P V+  ++   TGV           DL
Sbjct: 323  GGARQPRGLVLRDAA---PVRQLYEEKDSAGFEPLVMGVER---TGVDMPERKLHGFVDL 376

Query: 361  AIEAKAT-QPLAALAGFLDAFPG---RVLFTAESAGRREVLLELLERLKLRPKTVDSWPD 416
                 A  +P  AL   L  F     RVL    +   R   L+L E+  + P T+   P 
Sbjct: 377  FPAPDARDRPWQALVAGLHRFVATHARVLLCFGNERGRRKFLKLAEQDGITP-TLRYDPK 435

Query: 417  FVAGKDRLAITIAPLNDGLVLDDPALALVAESPLFGQRVMQRRRREKRADAANDAV--IK 474
               G+  +A+ +AP   G+ L      ++ E  L       + + ++ A  A+ A   + 
Sbjct: 436  ---GRGLMAV-VAPYRAGVELAWDGTLVIGEDVL-------QPKTDRSARVASGAFRGLD 484

Query: 475  NLTELREGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARY 534
                L+ G  +VH D+GV R++GL  +++     +FL LEYA   +LY+PV  L L+ R+
Sbjct: 485  KHEGLQPGDLLVHRDYGVARFVGLERMDLGGVGNDFLLLEYAGDDRLYLPVDRLSLVQRF 544

Query: 535  TGSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYET 594
             G+DD    L RLG   WQ +K KA + +  +AA+L+++YA R   +GY +      Y  
Sbjct: 545  KGADDTKPSLDRLGGGAWQSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPIGELYRE 604

Query: 595  FSAGFPFEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQV 654
            F A F FEET DQ   I+ V  DM  P PMDRLVCGDVGFGKTEVA+RAAF A   G+QV
Sbjct: 605  FEASFGFEETPDQARAIQDVLEDMDKPVPMDRLVCGDVGFGKTEVALRAAFRAASEGRQV 664

Query: 655  AILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHK 714
            A+L PTT+LA+QHY +FR R A +PV V ++SRF S ++    +A  A+G +DI+IGTH+
Sbjct: 665  ALLCPTTVLAEQHYQTFRSRLAGFPVNVGMLSRFVSKQKQTEVLAAAAKGHVDILIGTHR 724

Query: 715  LLQDDVKFKSLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRD 774
            LL DDV+  +LGL+++DEE RFGVR KE+LK  R  VD LTLTATPIPRTL +++SG+R+
Sbjct: 725  LLSDDVRLPNLGLLVLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLSMSGIRE 784

Query: 775  LSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAEL 834
            LS+I T P  R  V T ++E++ + +K  L RE+ R GQV+++HN V+ +E+    + +L
Sbjct: 785  LSVIETAPPERKPVATALIERDDAALKSILEREIAREGQVFWVHNRVQGLERTTEYVRKL 844

Query: 835  VPEARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFG 894
            VP+AR+G+ HGQM ER LE+ M  F+H   +VL+ + I+E+G+D P ANT+I+++A  FG
Sbjct: 845  VPDARVGMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFG 904

Query: 895  LAQLHQLRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEI 954
            L QL+QLRGRVGRS  QAYA  + P    ++  A +R+  I +   LGAGF +A  DL I
Sbjct: 905  LGQLYQLRGRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVAMEDLRI 964

Query: 955  RGAGELLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALI 1014
            RGAG +LG+ QSG +  VG  L++EMLE AV  + KG+ P          E+N+ +PA I
Sbjct: 965  RGAGNILGEAQSGHMTRVGLELFLEMLEEAVTRL-KGDPPRESVE----TELNIGIPAHI 1019

Query: 1015 PEDYLPDVHARLILYKRIASASDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTLLKLKAEQ 1074
            PE Y+ D   RL  YK ++SA+D    +D+++EM DR+G+ P   +  +   +LK +  +
Sbjct: 1020 PEGYIEDARDRLRFYKALSSATDAAAQQDIEMEMRDRYGVFPPELETFLALLVLKRQLRR 1079

Query: 1075 LGIKKVDGGPNGGRIEF-EAQTPVDPLVLIKLIQGQPKRYKFE 1116
            + +++ D  P+  R+ + E QT VD   LI+ +     R + +
Sbjct: 1080 MQVQRADIYPDKVRLVWDERQTAVDIGRLIEWVGQHADRARLQ 1122