Pairwise Alignments

Query, 1149 a.a., Transcription-repair coupling factor from Pseudomonas fluorescens FW300-N2E2

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  768 bits (1983), Expect = 0.0
 Identities = 450/1102 (40%), Positives = 639/1102 (57%), Gaps = 33/1102 (2%)

Query: 30   IAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHFPDWETLPYDLFSPHQDIIS 89
            +   AS      + +  D +    +   L+  AP +PVL FP W+ LPYD  SP+ +I +
Sbjct: 24   VLREASRPDGQAVFVARDDKRMAAMAAALAVTAPQIPVLRFPGWDCLPYDRSSPNPEISA 83

Query: 90   QRIASLYRLPELSHGV-----LVVPITTALHRLAPTQFLLGSSLVLDIGQKLDVEQMRTR 144
             R+A+L     L+HGV     L+  ++    R+     L  +S    +G ++D   +R  
Sbjct: 84   TRMATL---AALAHGVPGPFVLLTTLSAVTQRVPARATLAEASFSAQVGGRIDEAALRQF 140

Query: 145  LEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDDEIETLRTFDPENQRSID 204
            L   G+    TV E G++A+RG +ID+FP G   P R+DLF D ++  R FD   QR+ +
Sbjct: 141  LTRMGFVQAPTVTEPGDYAIRGGIIDIFPPGQSGPVRLDLFGDVLDGARRFDAATQRTTE 200

Query: 205  KVQSIRLLPAKEFPLQKDAVTRFKARFRERFDVDFRRCPIFQDLSSGITPAGIEYYLPLF 264
            K+ +I L P  E  L   A+TRF+  +R  F       P+++ +S+G   AG+E++LP F
Sbjct: 201  KLDAIELAPVSEIILDPAAITRFRQSYRIEFGAAGTDDPLYEAVSAGRKHAGMEHWLPFF 260

Query: 265  FEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRYEERR--------VDPSRPLLPP 316
             +   TL DY+P+ + +      E    + W  ++++YE RR        +       PP
Sbjct: 261  HDRLETLLDYVPEASLILD-DQFEAMHLSRWEGIKDQYETRRHALAQKGQMGTVYKPAPP 319

Query: 317  AELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPARALPDLAIE--AKATQPLAALA 374
              L++P  D  A L +   +  S     +G G      R   + A E  ++AT    ALA
Sbjct: 320  ETLYIPPADETALLATKRTLQLSVLPSASGPGVTDAGGRIGRNFAPERQSQATGLFEALA 379

Query: 375  GFLDAF--PGRVLFTAESAGRREVLLELLERLKLRPKT-VDSWPDFVAGKDRLAITIAPL 431
              +       +V+  + S G RE L  LLE   L   T +    D   G   + + +  L
Sbjct: 380  THITEKRKTSQVVIASWSEGARERLRGLLEDQDLSGLTEIARLSDIPEGTGGVHLLVWAL 439

Query: 432  NDGLVLDD---PALALVAESPLFGQRVMQRRRREKRADAANDAVIKNLTELREGAPVVHI 488
            ++G    D     L +++E  + G R+++  +R++RA+      ++  T L  G  VVH+
Sbjct: 440  DEGFEGPDHRSTRLTVISEQDVLGDRLIRTTKRKRRAEN----FLQEATSLSAGDLVVHV 495

Query: 489  DHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDALAPLHRLG 548
            DHGVG + GL T+       E L LEYA G +LY+PV N+ L++R+      +  L +LG
Sbjct: 496  DHGVGAFKGLETVTAMGAPHECLLLEYAGGDRLYLPVENIELLSRF---GQEIGMLDKLG 552

Query: 549  SETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYETFSAGFPFEETVDQQ 608
               WQ  K K  E++R++A +L+ I A RA R       P   +E FSA FP+ ET DQ 
Sbjct: 553  GGAWQAKKAKLKERIREMADKLIRIAAERALRRAPMLEPPPDMWEAFSARFPYTETDDQL 612

Query: 609  TTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTTLLAQQHY 668
            + IE V  D+ A  PMDRL+CGDVGFGKTEVAMRAAFIA   G QVA++ PTTLLA+QHY
Sbjct: 613  SAIEDVVHDLAAGTPMDRLICGDVGFGKTEVAMRAAFIAALSGVQVAVIAPTTLLARQHY 672

Query: 669  NSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDVKFKSLGLV 728
             SF DRF  +P+ V  +SRF   K        LA G +DIV+GTH LL   V+F +LGL+
Sbjct: 673  KSFADRFRGFPLEVRPLSRFVPAKAAADTRKGLAAGSVDIVVGTHALLAKGVRFHNLGLL 732

Query: 729  IIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSV 788
            IIDEE RFGV  KE+LK LRS+V +LTLTATPIPRTL +++SG+RDLSII TPP  RLS+
Sbjct: 733  IIDEEQRFGVGHKERLKELRSDVHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVDRLSI 792

Query: 789  RTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMR 848
            RT+V E +  T++EALLRE  RGGQ +++   +K I +  A L + VPE    + HGQM 
Sbjct: 793  RTYVSEFDPVTLREALLREHYRGGQSFFVVPRIKDIPEIEAFLRDQVPEVSFVVAHGQMA 852

Query: 849  ERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRS 908
              EL+  M+ FY  +++VL+A+TI+E+G+D+P+ANT+II RAD FGL+QL+Q+RGRVGR+
Sbjct: 853  AGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIIHRADMFGLSQLYQIRGRVGRA 912

Query: 909  HHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQSGQ 968
              +AYAYL T PR ++TP AEKRL  + +   LGAGF LA+ DL+IRGAG LLG+ QSGQ
Sbjct: 913  KTRAYAYLTTKPRMKLTPAAEKRLRVLGSLDSLGAGFTLASQDLDIRGAGNLLGEAQSGQ 972

Query: 969  IQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLG-GGPEINLRVPALIPEDYLPDVHARLI 1027
             + VGF LY  MLE A+  I+ G    L    G   P+INL VP LIPE Y+PD+  RL 
Sbjct: 973  FREVGFELYQSMLEEAIGKIKSGSLEGLTDDDGQWAPQINLGVPVLIPEAYVPDLDVRLG 1032

Query: 1028 LYKRIASASDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTLLKLKAEQLGIKKVDGGPNGG 1087
            LY+R++  + +  L+    E+IDRFG LP+    L+    +K   ++ GI K+DGGP G 
Sbjct: 1033 LYRRLSQLTTKVELEGFAAELIDRFGKLPKEVNTLLLIVRIKAMCKKAGIAKLDGGPKGA 1092

Query: 1088 RIEFEAQTPVDPLVLIKLIQGQ 1109
             ++F      +P  L+K I  Q
Sbjct: 1093 TVQFHNDKFANPAGLVKFINDQ 1114