Pairwise Alignments

Query, 325 a.a., Murein-DD-endopeptidase (EC 3.4.99.-) from Pseudomonas fluorescens FW300-N2E2

Subject, 321 a.a., D-alanyl-D-alanine endopeptidase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  345 bits (884), Expect = 1e-99
 Identities = 173/287 (60%), Positives = 227/287 (79%), Gaps = 1/287 (0%)

Query: 26  AFTGSFITQNVAAQETIAAPRDTAKLQVASGSAMLLDLQTDKVVYSSNPDVVVPIASVTK 85
           A + S  T++ A + T      T K +VA+ SA+++DL+T++++YSSNPD V PIASVTK
Sbjct: 26  ADSASVTTKSTATKATTPKKAHT-KQEVAANSALVVDLKTNEILYSSNPDAVRPIASVTK 84

Query: 86  LMTGLIVLDAKQNLDEYISITIANTPEMKGVFSRVKLNSELSRRDVLLIALMSSENRAAA 145
           LMT ++ LDAK  +DE ++I I +T EM+GV+SRV++ SE+SR+++LL+ LMSSENRAAA
Sbjct: 85  LMTAMVTLDAKLPMDEKLTINIKDTKEMRGVYSRVRIGSEISRKEMLLLTLMSSENRAAA 144

Query: 146 SLAHHYPGGYAAFIAAMNAKAKALGMTSTHYVEPTGLSIHNVSTARDLTKLLIAARKYPL 205
           SLAHHYPGG+ AFI AMNAKAKALGM ++ +VEPTGLS  NVS+ARDL  LL A++ YP+
Sbjct: 145 SLAHHYPGGHKAFIKAMNAKAKALGMKNSRFVEPTGLSAKNVSSARDLVVLLKASQGYPM 204

Query: 206 LSELSTTKEKTVTFRKPVYSLGFRNTDHLVHKANWDIQLTKTGFTNQAGHCLVLVTKMGN 265
           L +LS+T++KTVTF KP YSL FRNT+ LV+K NWDI LTKTGFTN AGHCLV+ T+M  
Sbjct: 205 LGQLSSTEKKTVTFGKPKYSLDFRNTNRLVYKDNWDIHLTKTGFTNAAGHCLVMRTEMAK 264

Query: 266 RPMALVILDAFGKYTHFADASRIRSWVETGKSAAVPAVALQYKAAKN 312
           R +A V+LDA GKYTH ADA+R+R+W+ETGK   +PA A QYK  ++
Sbjct: 265 RKVAFVVLDAKGKYTHMADANRLRNWLETGKVTPIPADAKQYKKQRS 311