Pairwise Alignments

Query, 168 a.a., RNA polymerase sigma-54 factor RpoN from Pseudomonas fluorescens FW300-N2E2

Subject, 171 a.a., RNA polymerase sigma-E factor (sigma-24) protein from Sinorhizobium meliloti 1021

 Score = 98.6 bits (244), Expect = 5e-26
 Identities = 59/154 (38%), Positives = 95/154 (61%), Gaps = 4/154 (2%)

Query: 1   MNAFDEQLRELIPRLRRFAVSLTRNPSNADDLVQMCLERALSKWNDKRPDGDLRAWLFSI 60
           M  F   L  L+P+LRRFA++L RN ++ADDLVQ   ERA+++ +    +G L +W++++
Sbjct: 7   MKDFRRDLVSLLPKLRRFAITLARNANDADDLVQEVCERAIARSHLWNGEGRLESWVYAM 66

Query: 61  LYRQFLDSHRRSR-RYARMLEFFTGRDDAH--PSAERSVIAQSSLQAFDQLTTEQRALLL 117
               ++D  R+ + R A  ++ F  RD+ H   +AE++  A    +    ++    ++ L
Sbjct: 67  TRNLWVDEIRKRKVRSAGAVDVFE-RDEPHVEATAEKAAYANQVQKMILSMSEGLASVFL 125

Query: 118 WVSVEGLSYQQIADILGVPTGTVMSRLSRARQAL 151
            V+VEG SY++ A+ILG+P GTVMSRLS AR  L
Sbjct: 126 LVNVEGHSYRETAEILGIPVGTVMSRLSTARLRL 159