Pairwise Alignments

Query, 168 a.a., RNA polymerase sigma-54 factor RpoN from Pseudomonas fluorescens FW300-N2E2

Subject, 184 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

 Score = 82.8 bits (203), Expect = 3e-21
 Identities = 50/152 (32%), Positives = 80/152 (52%), Gaps = 1/152 (0%)

Query: 4   FDEQLRELIPRLRRFAVSLTRNPSNADDLVQMCLERALSKWNDKRPDGDLRAWLFSILYR 63
           F  ++   +P LR FA+SL      ADDLVQ  + +A +K +      +++AWLF+IL  
Sbjct: 8   FKREMLAALPSLRAFAMSLIGRHDRADDLVQDTIMKAWAKQDHFEIGTNMKAWLFTILRN 67

Query: 64  QFLDSHRRSRRYARMLE-FFTGRDDAHPSAERSVIAQSSLQAFDQLTTEQRALLLWVSVE 122
           +     R+  R  +  +   T     HP    S+  Q   +A +QL  +QR  ++ V   
Sbjct: 68  ELYSQMRKRGREVQDSDGHLTETLAHHPEQYGSLDLQDFRRALEQLPPDQREAIILVGAS 127

Query: 123 GLSYQQIADILGVPTGTVMSRLSRARQALRQL 154
           G SY++ A I G   GT+ SR++RARQ L+++
Sbjct: 128 GFSYEEAATICGCALGTIKSRVNRARQRLQEI 159