Pairwise Alignments

Query, 168 a.a., RNA polymerase sigma-54 factor RpoN from Pseudomonas fluorescens FW300-N2E2

Subject, 184 a.a., RNA polymerase sigma factor protein from Sinorhizobium meliloti 1021

 Score =  101 bits (251), Expect = 8e-27
 Identities = 59/157 (37%), Positives = 97/157 (61%), Gaps = 11/157 (7%)

Query: 2   NAFDEQLRELIPRLRRFAVSLTRNPSNADDLVQMCLERALSKWNDKRPDGDLRAWLFSIL 61
           +AF+E++ EL+P LRR++ SL  +  + +DL+Q C+E+ L++    R   +LRAW F+I+
Sbjct: 20  DAFEEEVLELMPALRRYSRSLAHSDPDGEDLLQDCVEKVLARREQWR-GVNLRAWAFTIM 78

Query: 62  YRQFLDSHRRSRRYARM-----LEFFTGRDDAHPSAERSVIAQSSLQAFDQLTTEQRALL 116
              F + HRR  ++  +     L      D+A P  ER    Q  ++  ++L+ + RA+L
Sbjct: 79  TNLFRNGHRRRAQHPEVEFDEALGLRAEEDNADP-LER----QRLMRGLERLSADNRAVL 133

Query: 117 LWVSVEGLSYQQIADILGVPTGTVMSRLSRARQALRQ 153
           + V +EG  YQ +AD++ +P GTVMSRLSRAR+ L +
Sbjct: 134 MLVVIEGYRYQDVADMMEIPIGTVMSRLSRARRQLAE 170