Pairwise Alignments

Query, 420 a.a., Signal transduction histidine kinase from Pseudomonas fluorescens FW300-N2E2

Subject, 449 a.a., sensor protein CpxA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  178 bits (451), Expect = 3e-49
 Identities = 137/452 (30%), Positives = 217/452 (48%), Gaps = 43/452 (9%)

Query: 4   PSRLFWKLFLAFWLATSLTF-LVGL-GLLVMGSSR-PGDPHLETVLATEEQLLRQFGIES 60
           P+RLF KL L FWL +SL   LVGL  LL     R P  PHL+ VLAT  Q +++     
Sbjct: 2   PNRLFIKLLLGFWLCSSLIIALVGLLPLLQQNHDRAPIPPHLQKVLATIAQRIQENPTLL 61

Query: 61  GRQLLAVWEHPDDQ-----AVGVYDSAGQLL------------------AGTPVPQPAYE 97
               L  WE   D       + + +S GQ++                     P+     +
Sbjct: 62  KSDFLRRWERHRDMEGKPLRLYLTNSQGQVINTNRISRGVRSFMLMADEEKQPISHQFKD 121

Query: 98  RSIIGKDGIVLSLKSSHPLDKKGDRGPSHW---------TPLIIGTVMSALFSGYMAFYL 148
             + G     L  ++     +  D  P  W           L +  ++S L    +A++L
Sbjct: 122 ELVFGPYQFTLEGETYFLYGRLPDTHPRPWFFFFIENKLLTLSLAILLSGLLCALLAWHL 181

Query: 149 AWPLAYLRRAMSDVAQGRFETRVKPIMGERRDEIVDLAEDCDRMANQLKLLVDAQQHLLH 208
             PL  L+++   +A+G    RV     +R DEI  LA   + MA+ ++ +V  QQ L+ 
Sbjct: 182 GKPLRSLKKSADALAEGDLSNRVDKTTTQRNDEIGQLATAFNSMADSIEAMVKNQQRLMG 241

Query: 209 DISHELRSPLTRMQAAIGLLQQDPARLEMVERIDRESVRMDTLIEALLTLARLQGRPESI 268
           DISHELR+PLTR+Q ++ L ++   +    +RI  E+ +++ LI  LL L+R++    + 
Sbjct: 242 DISHELRTPLTRLQLSLALARKKGQQTTETDRIAYEAEQLEQLIAELLELSRVK-LSTNE 300

Query: 269 EREPIDVVELLSVIVEDARFEAQMKGCQVTLQACPAFVSRVSGELLYRCFENVIRNAVRH 328
            +  + + E LS +++DA FEA  +G ++T+    A       + L R  EN++RNA+R+
Sbjct: 301 TKVCLGLAESLSQVLDDAEFEADQQGKKITIDIDEAIELSHYPKSLSRAIENLLRNAIRY 360

Query: 329 TRPNTTVMVVAKVNGVADGLTVQISDQGAGVEHSRLQSIFNPFER---GLNEVSAGFGLG 385
            + +    +    +  +  + + I D G G++ + L+SIF PF R        S G+GLG
Sbjct: 361 AKSD----IHLHASQTSGQVQITIKDDGPGIDPAELESIFKPFYRPDSARQRESGGWGLG 416

Query: 386 LAIASRSVEIHGGTILARNEPSGGLTVEISLP 417
           LAI   ++  H G I A N    GL V ISLP
Sbjct: 417 LAITEAAISAHKGKIKAENREPHGLEVNISLP 448