Pairwise Alignments

Query, 395 a.a., Twitching motility protein PilT from Pseudomonas fluorescens FW300-N2E2

Subject, 370 a.a., twitching motility protein PilU (RefSeq) from Shewanella amazonensis SB2B

 Score =  366 bits (939), Expect = e-106
 Identities = 186/351 (52%), Positives = 247/351 (70%), Gaps = 1/351 (0%)

Query: 25  MEIDPLLRILASQNGSDLYMSTGAPPCARFEGVLKPLGNEAFKVGDIARLAGSLMDAEQR 84
           M++ P L+++  +  SDL+++ G PP A+ +G L+PL   AF          SLM   Q+
Sbjct: 1   MDVRPFLKVMVERKASDLFITAGFPPSAKIDGELRPLAENAFSPAQSLDFVESLMSDAQK 60

Query: 85  LEFDRELEMNLAISLAGVGRFRVNIFKQRNDVSMVIRNVKLDIPRFEDLKLPRVLLDTIM 144
            EF    E N A +   +GRFRV+ F QR     V+R ++  IP  EDLKLP VL D +M
Sbjct: 61  KEFHESRECNFAFAAKDLGRFRVSAFWQRESPGCVMRRIETKIPEMEDLKLPPVLKDLVM 120

Query: 145 QKQGLMLFVGATGSGKSTSLAALIDYRNRNSSGHIITIEDPVEYIHRHKKSIINQREVGV 204
            K+GL++ VG TG+GKSTSLAA++ YRN +  GHI+TIEDPVE++H H+KSII QREVG+
Sbjct: 121 SKRGLIIMVGGTGTGKSTSLAAMVGYRNGHERGHILTIEDPVEFVHDHRKSIITQREVGI 180

Query: 205 DTRSFHAALKNTLRQAPDVVLIGEIRDRETMEHALAFADTGHLVISTLHAHNANQALDRV 264
           DT SF AALK++LRQAPDV+LIGEIR +ETME AL+FA+TGHL ++TLHA+NANQALDR+
Sbjct: 181 DTESFDAALKSSLRQAPDVILIGEIRSQETMEFALSFAETGHLCMATLHANNANQALDRI 240

Query: 265 INFFPEERRPQLLNDLGNNLKAFVSQRLVRTRTGQ-RRAAVEVMLGSPTVADLIRRNELG 323
           ++  PE +  QLL DL  NL+  V+Q+LV    G  RRAA+E+++ +P V+ +I++NEL 
Sbjct: 241 MHLVPESKHQQLLFDLSLNLRGIVAQQLVPKADGTGRRAAIEILINTPRVSSIIQKNELH 300

Query: 324 ELKGIMEKSEELGMQTFDHALFNLVVEGAIDEEEALKNADSANNLRLRLKL 374
            LK  M KS E GMQTFD ALF L  EG I   +AL +ADS N+LRL +KL
Sbjct: 301 LLKDTMAKSNEQGMQTFDQALFKLYQEGEITYADALHHADSPNDLRLMIKL 351