Pairwise Alignments

Query, 395 a.a., Twitching motility protein PilT from Pseudomonas fluorescens FW300-N2E2

Subject, 370 a.a., twitching motility protein PilU (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  362 bits (928), Expect = e-104
 Identities = 187/361 (51%), Positives = 251/361 (69%), Gaps = 4/361 (1%)

Query: 25  MEIDPLLRILASQNGSDLYMSTGAPPCARFEGVLKPLGNEAFKVGDIARLAGSLMDAEQR 84
           M++ P L+++  +  SDL+++ G PP A+ +G L+PL    F          S+M   Q+
Sbjct: 1   MDVRPFLKVMVERKASDLFITAGFPPSAKIDGELRPLAESIFTPAQSLDFVESVMTEAQK 60

Query: 85  LEFDRELEMNLAISLAGVGRFRVNIFKQRNDVSMVIRNVKLDIPRFEDLKLPRVLLDTIM 144
            EF    E N A ++  +GRFRV+ F QR     V+R ++  IP  +DLKLP +L D +M
Sbjct: 61  KEFHTTRECNFAFAVKELGRFRVSAFWQRESPGCVMRRIETKIPEVDDLKLPPILKDLVM 120

Query: 145 QKQGLMLFVGATGSGKSTSLAALIDYRNRNSSGHIITIEDPVEYIHRHKKSIINQREVGV 204
            K+GL++ VG TG+GKSTSLAAL+ YRN ++ GHI+TIEDPVE++H H+KSII QREVG+
Sbjct: 121 SKRGLIIMVGGTGTGKSTSLAALVGYRNSHARGHILTIEDPVEFVHDHRKSIITQREVGI 180

Query: 205 DTRSFHAALKNTLRQAPDVVLIGEIRDRETMEHALAFADTGHLVISTLHAHNANQALDRV 264
           DT SF AALK++LRQAPDV+LIGEIR +ETME AL+FA+TGHL ++TLHA+NANQALDR+
Sbjct: 181 DTESFDAALKSSLRQAPDVILIGEIRTQETMEFALSFAETGHLCMATLHANNANQALDRI 240

Query: 265 INFFPEERRPQLLNDLGNNLKAFVSQRLVRTRTGQ-RRAAVEVMLGSPTVADLIRRNELG 323
           ++  PE +  QLL DL  NL+  V+Q+LV    G  RRAA+EV++ +P VA LI +NEL 
Sbjct: 241 MHLVPESKHQQLLFDLSLNLRGIVAQQLVPKVDGTGRRAAIEVLINTPRVASLIAKNELH 300

Query: 324 ELKGIMEKSEELGMQTFDHALFNLVVEGAIDEEEALKNADSANNLRLRLKLHTESGAVPP 383
            LK  M KS E GMQTFD AL  L V+G I   +AL +ADS N+LRL +KL  +    PP
Sbjct: 301 LLKETMAKSNEQGMQTFDQALLQLYVDGEISYADALHHADSPNDLRLMIKLQNKE---PP 357

Query: 384 A 384
           +
Sbjct: 358 S 358